ontologySimilarity: Calculating Ontological Similarities

Calculate similarity between ontological terms and sets of ontological terms based on term information content and assess statistical significance of similarity in the context of a collection of terms sets - Greene et al. 2017 <doi:10.1093/bioinformatics/btw763>.

Version: 2.7
Depends: R (≥ 3.5.0)
Imports: Rcpp (≥ 1.0.0), ontologyIndex (≥ 2.0)
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, paintmap
Published: 2024-03-29
DOI: 10.32614/CRAN.package.ontologySimilarity
Author: Daniel Greene
Maintainer: Daniel Greene <dg333 at cam.ac.uk>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
CRAN checks: ontologySimilarity results


Reference manual: ontologySimilarity.pdf
Vignettes: Gene Ontology data objects


Package source: ontologySimilarity_2.7.tar.gz
Windows binaries: r-devel: ontologySimilarity_2.7.zip, r-release: ontologySimilarity_2.7.zip, r-oldrel: ontologySimilarity_2.7.zip
macOS binaries: r-release (arm64): ontologySimilarity_2.7.tgz, r-oldrel (arm64): ontologySimilarity_2.7.tgz, r-release (x86_64): ontologySimilarity_2.7.tgz, r-oldrel (x86_64): ontologySimilarity_2.7.tgz
Old sources: ontologySimilarity archive

Reverse dependencies:

Reverse imports: SimReg


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