Methods for fast segmentation of multivariate
signals into piecewise constant profiles and for generating realistic
copy-number profiles. A typical application is the joint segmentation of total
DNA copy numbers and allelic ratios obtained from Single Nucleotide Polymorphism
(SNP) microarrays in cancer studies. The methods are described in Pierre-Jean,
Rigaill and Neuvial (2015) <doi:10.1093/bib/bbu026>.
| Version: |
1.0.3 |
| Depends: |
R (≥ 3.1.0) |
| Imports: |
acnr (≥ 0.3.1), matrixStats (≥ 0.6.0), DNAcopy |
| Suggests: |
PSCBS, R.cache, digest, changepoint (≥ 1.0.2), knitr, rmarkdown, testthat |
| Published: |
2025-05-14 |
| DOI: |
10.32614/CRAN.package.jointseg |
| Author: |
Morgane Pierre-Jean [aut, cre],
Pierre Neuvial [aut],
Guillem Rigaill [aut] |
| Maintainer: |
Morgane Pierre-Jean <mpierrejean.pro at gmail.com> |
| BugReports: |
https://github.com/mpierrejean/jointseg/issues |
| License: |
LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2.1)] |
| URL: |
https://github.com/mpierrejean/jointseg |
| NeedsCompilation: |
yes |
| Citation: |
jointseg citation info |
| Materials: |
README, NEWS |
| In views: |
TimeSeries |
| CRAN checks: |
jointseg results |