Probabilistic factor analysis for spatially-aware dimension reduction across multi-section spatial transcriptomics data with millions of spatial locations. More details can be referred to Wei Liu, et al. (2023) <doi:10.1101/2023.07.11.548486>.
| Version: | 1.4 |
| Depends: | R (≥ 4.0.0), gtools |
| Imports: | Rcpp (≥ 1.0.10), furrr, future, ggplot2, AnnotationDbi, DR.SC, Matrix, mclust, PRECAST, pbapply, biomaRt, irlba, org.Hs.eg.db, org.Mm.eg.db, Seurat, parallel, harmony, methods, stats, utils |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | knitr, rmarkdown, performance, nnet, scater, ggrepel, RANN, grDevices |
| Published: | 2024-03-18 |
| Author: | Wei Liu [aut, cre], Xiao Zhang [aut], Jin Liu [aut] |
| Maintainer: | Wei Liu <liuweideng at gmail.com> |
| BugReports: | https://github.com/feiyoung/ProFAST/issues |
| License: | GPL-3 |
| URL: | https://github.com/feiyoung/ProFAST |
| NeedsCompilation: | yes |
| Materials: | README |
| CRAN checks: | ProFAST results |
| Reference manual: | ProFAST.pdf |
| Vignettes: |
CoFAST: NSCLC CosMx data coembedding FAST: single DLPFC section FAST: two DLPFC sections FAST: simulation CoFAST: PBMC scRNA-seq data coembedding |
| Package source: | ProFAST_1.4.tar.gz |
| Windows binaries: | r-devel: ProFAST_1.4.zip, r-release: ProFAST_1.4.zip, r-oldrel: ProFAST_1.4.zip |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): ProFAST_1.4.tgz, r-release (x86_64): ProFAST_1.4.tgz, r-oldrel (x86_64): not available |
| Old sources: | ProFAST archive |
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