Last updated on 2025-11-30 12:50:25 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| babelmixr2 | 1 | 3 | 9 |
| dparser | 13 | ||
| lbfgsb3c | 13 | ||
| lotri | 13 | ||
| monolix2rx | 2 | 11 | |
| n1qn1 | 13 | ||
| nlmixr2 | 1 | 12 | |
| nlmixr2data | 13 | ||
| nlmixr2est | 2 | 11 | |
| nlmixr2extra | 13 | ||
| nlmixr2plot | 1 | 12 | |
| nonmem2rx | 3 | 10 | |
| PreciseSums | 13 | ||
| rxode2 | 3 | 10 | |
| rxode2ll | 2 | 11 |
Current CRAN status: ERROR: 1, NOTE: 3, OK: 9
Version: 0.1.11
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [261s/272s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(babelmixr2)
>
> test_check("babelmixr2")
Error in loadNamespace(x) : there is no package called 'qs'
Error in loadNamespace(x) : there is no package called 'qs'
Error in loadNamespace(x) : there is no package called 'qs'
Error in loadNamespace(x) : there is no package called 'qs'
Error in loadNamespace(x) : there is no package called 'qs'
Error in loadNamespace(x) : there is no package called 'qs'
Error in loadNamespace(x) : there is no package called 'qs'
i mu2 item: Rx_pow_di(WT, 2)
i writing monolix files
i done
i run Monolix manually and rerun nlmixr()
i mu2 item: Rx_pow_di(WT, 2)
i leaving alone monolix files because 'monolixTest-monolix.txt' is present
> loading into symengine environment...
> pruning branches (`if`/`else`) of full model...
v done
> loading into symengine environment...
> pruning branches (`if`/`else`) of full model...
v done
> finding duplicate expressions in EBE model...
[====|====|====|====|====|====|====|====|====|====] 0:00:00
> optimizing duplicate expressions in EBE model...
[====|====|====|====|====|====|====|====|====|====] 0:00:00
> compiling EBE model...
v done
> Calculating residuals/tables
v done
Error in loadNamespace(x) : there is no package called 'qs'
Error : nonmem minimization not successful
Error in loadNamespace(x) : there is no package called 'qs'
Error in loadNamespace(x) : there is no package called 'qs'
Error in loadNamespace(x) : there is no package called 'qs'
> loading into symengine environment...
> pruning branches (`if`/`else`) of full model...
v done
i writing nonmem files
i done
i only exported NONMEM control stream/data
> loading into symengine environment...
> pruning branches (`if`/`else`) of full model...
v done
i writing nonmem files
i done
> loading into symengine environment...
> pruning branches (`if`/`else`) of full model...
v done
> loading into symengine environment...
> pruning branches (`if`/`else`) of full model...
v done
> loading into symengine environment...
> pruning branches (`if`/`else`) of full model...
v done
i mu2 item: Rx_pow_di(WT, 2)
> loading into symengine environment...
> pruning branches (`if`/`else`) of full model...
v done
i writing nonmem files
i done
i only exported NONMEM control stream/data
i mu2 item: Rx_pow_di(WT, 2)
> loading into symengine environment...
> pruning branches (`if`/`else`) of full model...
v done
i only exported NONMEM control stream/data
Error in bblDatToPknca(model = env$ui, data = rawData, rxControl = rxControl) :
no dosing rows (EVID = 1 or 4) detected
Error : no rows in event table or input data
Error in nlmixr2Est(env, ...) :
Could not detect DV assignment for unit conversion
[ FAIL 11 | WARN 4 | SKIP 10 | PASS 259 ]
══ Skipped tests (10) ══════════════════════════════════════════════════════════
• On CRAN (9): 'test-as-nlmixr2.R:8:3', 'test-as-nlmixr2.R:66:3',
'test-bioavil-works.R:2:3', 'test-convert.R:2:3', 'test-convert.R:35:3',
'test-convert.R:215:3', 'test-convert.R:229:3', 'test-fmeMcmc.R:4:3',
'test-psuedoOptim.R:3:3'
• empty test (1):
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-monolix-read.R:62:7'): test monolix reading for 2019, 2020, and 2021 ──
Error: there is no package called 'qs'
Backtrace:
▆
1. ├─withr::with_tempdir(...) at test-monolix-read.R:60:5
2. │ └─withr::with_dir(tmp, code)
3. │ └─base::force(code)
4. └─babelmixr2 (local) .nlmixr(...) at test-monolix-read.R:62:7
5. ├─base::suppressWarnings(suppressMessages(nlmixr2est::nlmixr(...))) at test-monolix-read.R:1:24
6. │ └─base::withCallingHandlers(...)
7. ├─base::suppressMessages(nlmixr2est::nlmixr(...))
8. │ └─base::withCallingHandlers(...)
9. ├─nlmixr2est::nlmixr(...)
10. └─nlmixr2est:::nlmixr2.function(...)
11. └─nlmixr2est:::nlmixr2Est0(.env)
── Error ('test-monolix-read.R:151:5'): test more nlmixr2/monolix features ─────
Error: there is no package called 'qs'
Backtrace:
▆
1. ├─withr::with_tempdir(...) at test-monolix-read.R:149:3
2. │ └─withr::with_dir(tmp, code)
3. │ └─base::force(code)
4. └─babelmixr2 (local) .nlmixr(...) at test-monolix-read.R:151:5
5. ├─base::suppressWarnings(suppressMessages(nlmixr2est::nlmixr(...))) at test-monolix-read.R:1:24
6. │ └─base::withCallingHandlers(...)
7. ├─base::suppressMessages(nlmixr2est::nlmixr(...))
8. │ └─base::withCallingHandlers(...)
9. ├─nlmixr2est::nlmixr(...)
10. └─nlmixr2est:::nlmixr2.function(...)
11. └─nlmixr2est:::nlmixr2Est0(.env)
── Error ('test-monolix-read.R:187:5'): test Monolix pheno ─────────────────────
Error: there is no package called 'qs'
Backtrace:
▆
1. ├─withr::with_tempdir(...) at test-monolix-read.R:183:3
2. │ └─withr::with_dir(tmp, code)
3. │ └─base::force(code)
4. └─babelmixr2 (local) .nlmixr(pheno, nlmixr2data::pheno_sd, "monolix", control = monolixControl(modelName = "pheno")) at test-monolix-read.R:187:5
5. ├─base::suppressWarnings(suppressMessages(nlmixr2est::nlmixr(...))) at test-monolix-read.R:1:24
6. │ └─base::withCallingHandlers(...)
7. ├─base::suppressMessages(nlmixr2est::nlmixr(...))
8. │ └─base::withCallingHandlers(...)
9. ├─nlmixr2est::nlmixr(...)
10. └─nlmixr2est:::nlmixr2.function(...)
11. └─nlmixr2est:::nlmixr2Est0(.env)
── Error ('test-monolix-read.R:322:5'): pbpk mavoglurant ───────────────────────
Error: there is no package called 'qs'
Backtrace:
▆
1. ├─withr::with_tempdir(...) at test-monolix-read.R:320:3
2. │ └─withr::with_dir(tmp, code)
3. │ └─base::force(code)
4. └─babelmixr2 (local) .nlmixr(pbpk, nlmixr2data::mavoglurant, "monolix", control = monolixControl(modelName = "pbpk")) at test-monolix-read.R:322:5
5. ├─base::suppressWarnings(suppressMessages(nlmixr2est::nlmixr(...))) at test-monolix-read.R:1:24
6. │ └─base::withCallingHandlers(...)
7. ├─base::suppressMessages(nlmixr2est::nlmixr(...))
8. │ └─base::withCallingHandlers(...)
9. ├─nlmixr2est::nlmixr(...)
10. └─nlmixr2est:::nlmixr2.function(...)
11. └─nlmixr2est:::nlmixr2Est0(.env)
── Error ('test-monolix-read.R:386:5'): nimo test ──────────────────────────────
Error: there is no package called 'qs'
Backtrace:
▆
1. ├─withr::with_tempdir(...) at test-monolix-read.R:384:3
2. │ └─withr::with_dir(tmp, code)
3. │ └─base::force(code)
4. ├─base::suppressWarnings(.nlmixr2(nimo, tmp, "monolix", control = monolixControl(modelName = "nimo"))) at test-monolix-read.R:386:5
5. │ └─base::withCallingHandlers(...)
6. └─babelmixr2 (local) .nlmixr2(nimo, tmp, "monolix", control = monolixControl(modelName = "nimo"))
7. ├─base::suppressWarnings(suppressMessages(nlmixr2est::nlmixr(...))) at test-monolix-read.R:1:24
8. │ └─base::withCallingHandlers(...)
9. ├─base::suppressMessages(nlmixr2est::nlmixr(...))
10. │ └─base::withCallingHandlers(...)
11. ├─nlmixr2est::nlmixr(...)
12. └─nlmixr2est:::nlmixr2.function(...)
13. └─nlmixr2est:::nlmixr2Est0(.env)
── Error ('test-monolix-read.R:458:5'): Monolix wbc ────────────────────────────
Error: there is no package called 'qs'
Backtrace:
▆
1. ├─withr::with_tempdir(...) at test-monolix-read.R:455:3
2. │ └─withr::with_dir(tmp, code)
3. │ └─base::force(code)
4. ├─base::suppressWarnings(...) at test-monolix-read.R:458:5
5. │ └─base::withCallingHandlers(...)
6. └─babelmixr2 (local) .nlmixr2(wbc, nlmixr2data::wbcSim, "monolix", control = monolixControl(modelName = "wbc"))
7. ├─base::suppressWarnings(suppressMessages(nlmixr2est::nlmixr(...))) at test-monolix-read.R:1:24
8. │ └─base::withCallingHandlers(...)
9. ├─base::suppressMessages(nlmixr2est::nlmixr(...))
10. │ └─base::withCallingHandlers(...)
11. ├─nlmixr2est::nlmixr(...)
12. └─nlmixr2est:::nlmixr2.function(...)
13. └─nlmixr2est:::nlmixr2Est0(.env)
── Error ('test-monolix-read.R:493:5'): Monolix wbc test 2 ─────────────────────
Error: there is no package called 'qs'
Backtrace:
▆
1. ├─withr::with_tempdir(...) at test-monolix-read.R:490:3
2. │ └─withr::with_dir(tmp, code)
3. │ └─base::force(code)
4. ├─wbc %>% ini(prop.err = 15) %>% ... at test-monolix-read.R:493:5
5. └─babelmixr2 (local) .nlmixr2(., nlmixr2data::wbcSim, "monolix", control = monolixControl(modelName = "x"))
6. ├─base::suppressWarnings(suppressMessages(nlmixr2est::nlmixr(...))) at test-monolix-read.R:1:24
7. │ └─base::withCallingHandlers(...)
8. ├─base::suppressMessages(nlmixr2est::nlmixr(...))
9. │ └─base::withCallingHandlers(...)
10. ├─nlmixr2est::nlmixr(...)
11. └─nlmixr2est:::nlmixr2.rxUi(...)
12. └─nlmixr2est:::nlmixr2Est0(.env)
── Failure ('test-nonmem-pred.R:26:5'): nonmem $pred model ─────────────────────
Expected `nlmixr2est::nlmixr(ipredWang2007, dat, "nonmem")` not to throw any errors.
Actually got a <simpleError> with message:
there is no package called 'qs'
Backtrace:
▆
1. ├─withr::with_tempdir(...) at test-nonmem-pred.R:24:3
2. │ └─withr::with_dir(tmp, code)
3. │ └─base::force(code)
4. ├─testthat::expect_error(...) at test-nonmem-pred.R:26:5
5. │ └─testthat:::expect_condition_matching_(...)
6. │ └─testthat:::quasi_capture(...)
7. │ ├─testthat (local) .capture(...)
8. │ │ └─base::withCallingHandlers(...)
9. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
10. ├─nlmixr2est::nlmixr(ipredWang2007, dat, "nonmem")
11. └─nlmixr2est:::nlmixr2.function(ipredWang2007, dat, "nonmem")
12. └─nlmixr2est:::nlmixr2Est0(.env)
── Error ('test-nonmem-read.R:72:5'): warfarin NONMEM reading ──────────────────
Error: there is no package called 'qs'
Backtrace:
▆
1. ├─withr::with_tempdir(...) at test-nonmem-read.R:62:3
2. │ └─withr::with_dir(tmp, code)
3. │ └─base::force(code)
4. └─babelmixr2 (local) .nlmixr(...) at test-nonmem-read.R:72:5
5. ├─base::suppressWarnings(suppressMessages(nlmixr2est::nlmixr(...))) at test-nonmem-read.R:1:24
6. │ └─base::withCallingHandlers(...)
7. ├─base::suppressMessages(nlmixr2est::nlmixr(...))
8. │ └─base::withCallingHandlers(...)
9. ├─nlmixr2est::nlmixr(...)
10. └─nlmixr2est:::nlmixr2.function(...)
11. └─nlmixr2est:::nlmixr2Est0(.env)
── Error ('test-nonmem-read.R:134:5'): pheno NONMEM reading ────────────────────
Error: there is no package called 'qs'
Backtrace:
▆
1. ├─withr::with_tempdir(...) at test-nonmem-read.R:132:3
2. │ └─withr::with_dir(tmp, code)
3. │ └─base::force(code)
4. └─babelmixr2 (local) .nlmixr(pheno, nlmixr2data::pheno_sd, "nonmem", control = nonmemControl(modelName = "pheno")) at test-nonmem-read.R:134:5
5. ├─base::suppressWarnings(suppressMessages(nlmixr2est::nlmixr(...))) at test-nonmem-read.R:1:24
6. │ └─base::withCallingHandlers(...)
7. ├─base::suppressMessages(nlmixr2est::nlmixr(...))
8. │ └─base::withCallingHandlers(...)
9. ├─nlmixr2est::nlmixr(...)
10. └─nlmixr2est:::nlmixr2.function(...)
11. └─nlmixr2est:::nlmixr2Est0(.env)
── Error ('test-nonmem-read.R:208:5'): wbc NONMEM reading ──────────────────────
Error: there is no package called 'qs'
Backtrace:
▆
1. ├─withr::with_tempdir(...) at test-nonmem-read.R:201:3
2. │ └─withr::with_dir(tmp, code)
3. │ └─base::force(code)
4. └─babelmixr2 (local) .nlmixr2(...) at test-nonmem-read.R:208:5
5. ├─base::suppressWarnings(suppressMessages(nlmixr2est::nlmixr(...))) at test-nonmem-read.R:1:24
6. │ └─base::withCallingHandlers(...)
7. ├─base::suppressMessages(nlmixr2est::nlmixr(...))
8. │ └─base::withCallingHandlers(...)
9. ├─nlmixr2est::nlmixr(...)
10. └─nlmixr2est:::nlmixr2.function(...)
11. └─nlmixr2est:::nlmixr2Est0(.env)
[ FAIL 11 | WARN 4 | SKIP 10 | PASS 259 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.10
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘lixoftConnectors’
Flavors: r-oldrel-macos-arm64, r-oldrel-windows-x86_64
Version: 0.1.11
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘lixoftConnectors’
Flavor: r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 0.0.6
Check: installed package size
Result: NOTE
installed size is 6.0Mb
sub-directories of 1Mb or more:
libs 3.7Mb
theo 1.1Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 4.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [24s/31s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(nlmixr2)
── Attaching packages ───────────────────────────────────────── nlmixr2 4.0.1 ──
✔ lotri 1.0.2 ✔ nlmixr2extra 3.0.2
✔ nlmixr2data 2.0.9 ✔ nlmixr2plot 3.0.3
✔ nlmixr2est 4.1.1 ✔ rxode2 5.0.0
── Optional Packages Loaded/Ignored ─────────────────────────── nlmixr2 4.0.1 ──
✖ babelmixr2 ✖ nonmem2rx
✖ ggPMX ✖ posologyr
✖ monolix2rx ✖ shinyMixR
✖ nlmixr2lib ✖ xpose.nlmixr2
✖ nlmixr2rpt
── Conflicts ───────────────────────────────────────────── nlmixr2conflicts() ──
✖ rxode2::boxCox() masks nlmixr2est::boxCox()
✖ rxode2::yeoJohnson() masks nlmixr2est::yeoJohnson()
>
> test_check("nlmixr2")
Error in loadNamespace(x) : there is no package called 'qs'
Saving _problems/test-basic-nlmixr2-50.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 3 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-basic-nlmixr2.R:47:3'): basic nlmixr tests ─────────────────────
Error: there is no package called 'qs'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-basic-nlmixr2.R:47:3
2. │ └─base::withCallingHandlers(...)
3. ├─nlmixr2est::nlmixr(...)
4. └─nlmixr2est:::nlmixr2.function(...)
5. └─nlmixr2est:::nlmixr2Est0(.env)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 3 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 4.1.1
Check: installed package size
Result: NOTE
installed size is 22.8Mb
sub-directories of 1Mb or more:
R 2.1Mb
libs 19.6Mb
Flavor: r-oldrel-macos-arm64
Version: 5.0.2
Check: installed package size
Result: NOTE
installed size is 22.3Mb
sub-directories of 1Mb or more:
R 2.0Mb
libs 19.1Mb
Flavor: r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 3.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [36s/45s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(nlmixr2plot)
>
> test_check("nlmixr2plot")
Error in loadNamespace(x) : there is no package called 'qs'
Saving _problems/test-nlmixr2PlotList-46.R
Error in loadNamespace(x) : there is no package called 'qs'
Saving _problems/test-plots-41.R
[ FAIL 2 | WARN 0 | SKIP 2 | PASS 5 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• On CRAN (2): 'test-plots-cens.R:2:3', 'test-plots-multiple-endpoints.R:2:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-nlmixr2PlotList.R:38:3'): test addition operator ───────────────
Error: there is no package called 'qs'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-nlmixr2PlotList.R:38:3
2. │ └─base::withCallingHandlers(...)
3. ├─nlmixr2est::nlmixr(...)
4. └─nlmixr2est:::nlmixr2.function(...)
5. └─nlmixr2est:::nlmixr2Est0(.env)
── Error ('test-plots.R:33:3'): test plots with vdiffr ─────────────────────────
Error: there is no package called 'qs'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-plots.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─nlmixr2est::nlmixr(...)
4. └─nlmixr2est:::nlmixr2.function(...)
5. └─nlmixr2est:::nlmixr2Est0(.env)
[ FAIL 2 | WARN 0 | SKIP 2 | PASS 5 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Current CRAN status: NOTE: 3, OK: 10
Version: 0.1.8
Check: installed package size
Result: NOTE
installed size is 9.3Mb
sub-directories of 1Mb or more:
libs 5.3Mb
mods 3.3Mb
Flavor: r-oldrel-macos-arm64
Version: 0.1.9
Check: installed package size
Result: NOTE
installed size is 9.6Mb
sub-directories of 1Mb or more:
libs 5.5Mb
mods 3.4Mb
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 4.1.1
Check: installed package size
Result: NOTE
installed size is 11.3Mb
sub-directories of 1Mb or more:
R 2.1Mb
include 1.3Mb
libs 6.0Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-windows-x86_64
Version: 5.0.0
Check: installed package size
Result: NOTE
installed size is 11.8Mb
sub-directories of 1Mb or more:
R 2.0Mb
include 1.3Mb
libs 6.6Mb
Flavor: r-oldrel-macos-x86_64
Current CRAN status: NOTE: 2, OK: 11
Version: 2.0.13
Check: installed package size
Result: NOTE
installed size is 13.9Mb
sub-directories of 1Mb or more:
libs 13.8Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64