sits: Satellite Image Time Series Analysis for Earth Observation Data Cubes

An end-to-end toolkit for land use and land cover classification using big Earth observation data, based on machine learning methods applied to satellite image data cubes, as described in Simoes et al (2021) <doi:10.3390/rs13132428>. Builds regular data cubes from collections in AWS, Microsoft Planetary Computer, Brazil Data Cube, and Digital Earth Africa using the STAC protocol <https://stacspec.org/> and the 'gdalcubes' R package <doi:10.3390/data4030092>. Supports visualization methods for images and time series and smoothing filters for dealing with noisy time series. Includes functions for quality assessment of training samples using self-organized maps as presented by Santos et al (2021) <doi:10.1016/j.isprsjprs.2021.04.014>. Provides machine learning methods including support vector machines, random forests, extreme gradient boosting, multi-layer perceptrons, temporal convolutional neural networks <doi:10.3390/rs11050523>, residual networks <arXiv:1809.04356>, and temporal attention encoders <arXiv:2007.00586>. Performs efficient classification of big Earth observation data cubes and includes functions for post-classification smoothing based on Bayesian inference, and methods for uncertainty assessment. Enables best practices for estimating area and assessing accuracy of land change as recommended by Olofsson et al(2014) <doi:10.1016/j.rse.2014.02.015>. Minimum recommended requirements: 16 GB RAM and 4 CPU dual-core.

Version: 1.0.0
Depends: R (≥ 4.0.0)
Imports: magrittr, yaml, data.table (≥ 1.13), dplyr (≥ 1.0.0), gdalUtilities, grDevices, ggplot2, graphics, lubridate, parallel (≥ 4.0.5), purrr (≥ 0.3.0), Rcpp, rstac (≥ 0.9.1-5), sf (≥ 1.0), slider (≥ 0.2.0), stats, terra (≥ 1.5-17), tibble (≥ 3.1), tidyr (≥ 1.2.0), torch (≥ 0.7.0), utils
LinkingTo: Rcpp, RcppArmadillo
Suggests: caret, dendextend, dtwclust, dtwSat (≥ 0.2.7), digest, e1071, FNN, gdalcubes (≥ 0.6.0), geojsonsf, httr, jsonlite, kohonen (≥ 3.0.11), leafem (≥ 0.2.0), leaflet (≥ 2.1.1), luz (≥ 0.2.0), methods, mgcv, openxlsx, randomForest, RcppArmadillo (≥ 0.11), scales, stars (≥ 0.5), testthat (≥ 3.1.3), torchopt (≥ 0.1.1), xgboost, zoo
Published: 2022-05-19
Author: Rolf Simoes [aut], Gilberto Camara [aut, cre], Felipe Souza [aut], Lorena Santos [aut], Pedro Andrade [aut], Karine Ferreira [aut], Alber Sanchez [aut], Gilberto Queiroz [aut]
Maintainer: Gilberto Camara <gilberto.camara.inpe at gmail.com>
BugReports: https://github.com/e-sensing/sits/issues
License: GPL-2
URL: https://github.com/e-sensing/sits/, https://e-sensing.github.io/sitsbook/
NeedsCompilation: yes
Language: en-US
Citation: sits citation info
Materials: NEWS
CRAN checks: sits results

Documentation:

Reference manual: sits.pdf

Downloads:

Package source: sits_1.0.0.tar.gz
Windows binaries: r-devel: sits_1.0.0.zip, r-release: sits_1.0.0.zip, r-oldrel: sits_1.0.0.zip
macOS binaries: r-release (arm64): sits_1.0.0.tgz, r-oldrel (arm64): sits_1.0.0.tgz, r-release (x86_64): sits_1.0.0.tgz, r-oldrel (x86_64): sits_1.0.0.tgz

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