microeco: Microbial Community Ecology Data Analysis

A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity analysis, beta diversity analysis, differential abundance test, null model analysis, network analysis, machine learning, environmental data analysis and functional analysis.

Version: 0.13.0
Depends: R (≥ 3.5.0)
Imports: R6, stats, ape, vegan, rlang, data.table, magrittr, dplyr, tibble, scales, grid, ggplot2, RColorBrewer, reshape2
Suggests: GUniFrac, MASS, ggpubr, randomForest, ggdendro, ggrepel, agricolae, gridExtra, picante, pheatmap, igraph, rgexf, mice, GGally
Published: 2022-11-15
Author: Chi Liu [aut, cre], Felipe R. P. Mansoldo [ctb], Umer Zeeshan Ijaz [ctb], Chenhao Li [ctb], Yang Cao [ctb], Minjie Yao [ctb], Xiangzhen Li [ctb]
Maintainer: Chi Liu <liuchi0426 at 126.com>
License: GPL-3
URL: https://github.com/ChiLiubio/microeco
NeedsCompilation: no
Citation: microeco citation info
CRAN checks: microeco results

Documentation:

Reference manual: microeco.pdf

Downloads:

Package source: microeco_0.13.0.tar.gz
Windows binaries: r-devel: microeco_0.13.0.zip, r-release: microeco_0.12.0.zip, r-oldrel: microeco_0.13.0.zip
macOS binaries: r-release (arm64): microeco_0.13.0.tgz, r-oldrel (arm64): microeco_0.13.0.tgz, r-release (x86_64): microeco_0.13.0.tgz, r-oldrel (x86_64): microeco_0.13.0.tgz
Old sources: microeco archive

Reverse dependencies:

Reverse imports: file2meco, meconetcomp

Linking:

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