Cascade: Selection, Reverse-Engineering and Prediction in Cascade Networks
A modeling tool allowing gene selection, reverse engineering, and prediction in cascade networks. Jung, N., Bertrand, F., Bahram, S., Vallat, L., and Maumy-Bertrand, M. (2014) <doi:10.1093/bioinformatics/btt705>.
| Version: | 2.3 |
| Depends: | R (≥ 3.5.0) |
| Imports: | abind, animation, cluster, grid, igraph, lars, lattice, limma, magic, methods, nnls, splines, stats4, survival, tnet, VGAM |
| Suggests: | R.rsp, CascadeData, knitr, testthat (≥ 3.0.0) |
| Published: | 2025-09-19 |
| DOI: | 10.32614/CRAN.package.Cascade |
| Author: | Frederic Bertrand 
[cre, aut],
Myriam Maumy-Bertrand
[aut],
Laurent Vallat [ctb],
Nicolas Jung [ctb] |
| Maintainer: | Frederic Bertrand <frederic.bertrand at lecnam.net> |
| BugReports: | https://github.com/fbertran/Cascade/issues/ |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://fbertran.github.io/Cascade/, https://github.com/fbertran/Cascade/ |
| NeedsCompilation: | no |
| Classification/MSC: | 62J05, 62J07, 62J99, 92C42 |
| Citation: | Cascade citation info |
| Materials: | README, NEWS |
| In views: | NetworkAnalysis, Omics |
| CRAN checks: | Cascade results |
Documentation:
| Reference manual: | Cascade.html , Cascade.pdf |
| Vignettes: |
Cascade: Manual (source) Cascade: Introduction to Cascade (source) Cascade: E-MTAB-1475_re-analysis (source) |
Downloads:
| Package source: | Cascade_2.3.tar.gz |
| Windows binaries: | r-devel: Cascade_2.3.zip, r-release: Cascade_2.3.zip, r-oldrel: Cascade_2.3.zip |
| macOS binaries: | r-release (arm64): Cascade_2.3.tgz, r-oldrel (arm64): Cascade_2.3.tgz, r-release (x86_64): Cascade_2.3.tgz, r-oldrel (x86_64): Cascade_2.3.tgz |
| Old sources: | Cascade archive |
Reverse dependencies:
| Reverse imports: | SelectBoost |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=Cascade to link to this page.