Last updated on 2024-08-31 11:50:01 CEST.
| Package | FAIL | NOTE | OK |
|---|---|---|---|
| polySegratio | 1 | 9 | 3 |
| polySegratioMM | 10 | 3 |
Current CRAN status: FAIL: 1, NOTE: 9, OK: 3
Version: 0.2-5
Check: Rd files
Result: NOTE
checkRd: (-1) addMisclass.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) addMisclass.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) addMisclass.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) addMisclass.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) addMisclass.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) addMisclass.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) addMisclass.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) divide.autoMarkers.Rd:33-34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) divide.autoMarkers.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) divide.autoMarkers.Rd:36-37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) divide.autoMarkers.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) divide.autoMarkers.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) divideAutoMarkers.Rd:13: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) divideAutoMarkers.Rd:14: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) divideAutoMarkers.Rd:15-16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) divideAutoMarkers.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) divideAutoMarkers.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) expected.segRatio.Rd:33-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) expected.segRatio.Rd:35-36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.segRatio.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.segRatio.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.segRatio.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.segRatio.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polySegratio-package.Rd:42-43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polySegratio-package.Rd:44-45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.autoMarkers.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim.autoMarkers.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim.autoMarkers.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim.autoMarkers.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim.autoMarkers.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim.autoMarkers.Rd:69-70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simAutoCross.Rd:31: Lost braces
31 | with components sQuote{p01}, \sQuote{p10} and \sQuote{p11}}
| ^
checkRd: (-1) simAutoMarkers.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simAutoMarkers.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simAutoMarkers.Rd:29-30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) test.segRatio.Rd:44-45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.segRatio.Rd:46-47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) testSegRatio.Rd:23-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) testSegRatio.Rd:25-26: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 0.2-5
Check: PDF version of manual
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
Sum 335 95 37 9 24 500
>
> ## summarise binomial CI vs true
> ab <- test.segRatio(a$seg.ratios, ploidy=8, method="bin")
> print(addmargins(table(a$true.doses$dosage, ab$dosage, exclude=NULL)))
1 2 3 4 <NA> Sum
1 335 0 0 0 14 349
2 0 94 0 0 11 105
3 0 0 36 1 1 38
4 0 0 0 8 0 8
Sum 335 94 36 9 26 500
>
>
>
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed: 2.64 0.09 2.75 NA NA
> grDevices::dev.off()
null device
1
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-release-windows-x86_64
Current CRAN status: NOTE: 10, OK: 3
Version: 0.6-4
Check: Rd files
Result: NOTE
checkRd: (-1) calculateDIC.Rd:30-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculateDIC.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polySegratioMM-package.Rd:70-72: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 0.6-4
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
‘test-data.R’ ‘test-inits.R’ ‘test.bug’ ‘test.cmd’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.6-4
Check: Rd cross-references
Result: NOTE
Undeclared package ‘Rcmdr’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang