Last updated on 2024-08-31 11:49:59 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| CohortCharacteristics | 6 | 7 | |
| DrugUtilisation | 2 | 11 | |
| omopgenerics | 2 | 11 | |
| PatientProfiles | 2 | 11 |
Current CRAN status: NOTE: 6, OK: 7
Version: 0.2.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘PaRe’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Current CRAN status: ERROR: 2, OK: 11
Version: 0.7.0
Check: package dependencies
Result: ERROR
Packages required and available but unsuitable versions:
'CodelistGenerator', 'omopgenerics'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 2, OK: 11
Version: 0.3.0
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘codelists.Rmd’
...
> condition_codes <- list(c(201820, 4087682, 3655269))
> newCodelist(condition_codes)
When sourcing ‘codelists.R’:
Error: ! `codelist` must be named.
`codelist` must be a list with objects of class numeric, integer, and
integer64; it can not contain NA; it has to be named; it can not be NULL.
Execution halted
‘cdm_reference.Rmd’ using ‘UTF-8’... [1s/1s] OK
‘codelists.Rmd’ using ‘UTF-8’... failed
‘cohorts.Rmd’ using ‘UTF-8’... [3s/3s] OK
‘reexport.Rmd’ using ‘UTF-8’... [0s/0s] OK
‘summarised_result.Rmd’ using ‘UTF-8’... [2s/2s] OK
Flavor: r-oldrel-macos-arm64
Version: 0.3.0
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘codelists.Rmd’
...
> condition_codes <- list(c(201820, 4087682, 3655269))
> newCodelist(condition_codes)
When sourcing ‘codelists.R’:
Error: ! `codelist` must be named.
`codelist` must be a list with objects of class numeric, integer, and
integer64; it can not contain NA; it has to be named; it can not be NULL.
Execution halted
‘cdm_reference.Rmd’ using ‘UTF-8’... [1s/1s] OK
‘codelists.Rmd’ using ‘UTF-8’... failed
‘cohorts.Rmd’ using ‘UTF-8’... [5s/10s] OK
‘reexport.Rmd’ using ‘UTF-8’... [0s/0s] OK
‘summarised_result.Rmd’ using ‘UTF-8’... [2s/5s] OK
Flavor: r-oldrel-macos-x86_64
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.1
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘concept-intersect.Rmd’
...
> ggplot(dplyr::bind_rows(dplyr::mutate(dplyr::arrange(dplyr::collect(dplyr::tally(dplyr::group_by(addCohortIntersectCount(cdm$ankle_sprain,
+ ta .... [TRUNCATED]
When sourcing ‘concept-intersect.R’:
Error: ℹ In argument: `161_acetaminophen_minf_to_inf`
Caused by error:
! Object `161_acetaminophen_minf_to_inf` not found.
Execution halted
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
‘cohort-intersect.Rmd’ using ‘UTF-8’... [20s/21s] OK
‘concept-intersect.Rmd’ using ‘UTF-8’... failed
‘demographics.rmd’ using ‘UTF-8’... [19s/19s] OK
‘summarise.Rmd’ using ‘UTF-8’... [23s/25s] OK
‘table-intersect.Rmd’ using ‘UTF-8’... [15s/16s] OK
Flavor: r-oldrel-macos-arm64
Version: 1.1.1
Check: re-building of vignette outputs
Result: NOTE
Error(s) in re-building vignettes:
--- re-building ‘cohort-intersect.Rmd’ using rmarkdown
--- finished re-building ‘cohort-intersect.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘concept-intersect.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from lines 185-229 [unnamed-chunk-11] (concept-intersect.Rmd)
Error: processing vignette 'concept-intersect.Rmd' failed with diagnostics:
ℹ In argument: `161_acetaminophen_minf_to_inf`
Caused by error:
! Object `161_acetaminophen_minf_to_inf` not found.
--- failed re-building ‘concept-intersect.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘demographics.rmd’ using rmarkdown
--- finished re-building ‘demographics.rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘summarise.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘summarise.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘table-intersect.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘table-intersect.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
SUMMARY: processing the following file failed:
‘concept-intersect.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.1.1
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘concept-intersect.Rmd’
...
> ggplot(dplyr::bind_rows(dplyr::mutate(dplyr::arrange(dplyr::collect(dplyr::tally(dplyr::group_by(addCohortIntersectCount(cdm$ankle_sprain,
+ ta .... [TRUNCATED]
When sourcing ‘concept-intersect.R’:
Error: ℹ In argument: `161_acetaminophen_minf_to_inf`
Caused by error:
! Object `161_acetaminophen_minf_to_inf` not found.
Execution halted
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
‘cohort-intersect.Rmd’ using ‘UTF-8’... [35s/52s] OK
‘concept-intersect.Rmd’ using ‘UTF-8’... failed
‘demographics.rmd’ using ‘UTF-8’... [31s/47s] OK
‘summarise.Rmd’ using ‘UTF-8’... [34s/46s] OK
‘table-intersect.Rmd’ using ‘UTF-8’... [23s/33s] OK
Flavor: r-oldrel-macos-x86_64