Last updated on 2024-05-01 12:14:17 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 7.72 | 284.69 | 292.41 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 6.91 | 200.74 | 207.65 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 269.98 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 263.87 | ERROR | |||
| r-devel-windows-x86_64 | 0.1.0 | 9.00 | 191.00 | 200.00 | OK | |
| r-patched-linux-x86_64 | 0.1.0 | 7.95 | 275.03 | 282.98 | OK | |
| r-release-linux-x86_64 | 0.1.0 | 7.92 | 271.16 | 279.08 | OK | |
| r-release-macos-arm64 | 0.1.0 | 77.00 | OK | |||
| r-release-macos-x86_64 | 0.1.0 | 146.00 | OK | |||
| r-release-windows-x86_64 | 0.1.0 | 9.00 | 191.00 | 200.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.0 | 90.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.1.0 | 133.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.1.0 | 12.00 | 253.00 | 265.00 | OK |
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [116s/120s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(CohortCharacteristics)
>
> test_check("CohortCharacteristics")
Starting 2 test processes
[ FAIL 5 | WARN 0 | SKIP 13 | PASS 5 ]
══ Skipped tests (13) ══════════════════════════════════════════════════════════
• On CRAN (12): 'test-plotCharacteristics.R:2:3',
'test-plotLargeScaleCharacteristics.R:3:3', 'test-plotSummarised.R:2:3',
'test-plotSummarised.R:82:3', 'test-plotSummarised.R:179:3',
'test-plotSummarised.R:263:3', 'test-summariseCohortIntersect.R:2:3',
'test-summariseCohortOverlap.R:2:3', 'test-summariseCohortTiming.R:2:3',
'test-summariseLargeScaleCharacteristics.R:2:3',
'test-tableSummarised.R:2:3', 'test-tableSummarised.R:114:3'
• empty test (1): 'test-tableSummarised.R:235:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-summariseCharacteristics.R:76:3'): test summariseCharacteristics ──
Expected `... <- NULL` to run without any errors.
i Actually got a <vctrs_error_subscript_oob> with text:
Can't select columns that don't exist.
x Column `result_type` doesn't exist.
── Error ('test-summariseCharacteristics.R:88:3'): test summariseCharacteristics ──
Error in `eval(code, test_env)`: object 'result' not found
Backtrace:
▆
1. ├─testthat::expect_true(inherits(result, "summarised_result")) at test-summariseCharacteristics.R:88:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─base::inherits(result, "summarised_result")
── Failure ('test-summariseCharacteristics.R:291:3'): test empty cohort ────────
Expected `summariseCharacteristics(...)` to run without any errors.
i Actually got a <vctrs_error_subscript_oob> with text:
Can't select columns that don't exist.
x Column `result_type` doesn't exist.
── Failure ('test-summariseCharacteristics.R:301:3'): test empty cohort ────────
Expected `... <- NULL` to run without any errors.
i Actually got a <vctrs_error_subscript_oob> with text:
Can't select columns that don't exist.
x Column `result_type` doesn't exist.
── Failure ('test-summariseCharacteristics.R:308:3'): test empty cohort ────────
Expected `... <- NULL` to run without any errors.
i Actually got a <vctrs_error_subscript_oob> with text:
Can't select columns that don't exist.
x Column `result_type` doesn't exist.
[ FAIL 5 | WARN 0 | SKIP 13 | PASS 5 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘a06_summarisePatientCharacteristics.Rmd’ using rmarkdown
Quitting from lines at lines 27-109 [unnamed-chunk-2] (a06_summarisePatientCharacteristics.Rmd)
Error: processing vignette 'a06_summarisePatientCharacteristics.Rmd' failed with diagnostics:
Can't select columns that don't exist.
✖ Column `result_type` doesn't exist.
--- failed re-building ‘a06_summarisePatientCharacteristics.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘a08_summariseCohortOverlap.Rmd’ using rmarkdown
--- finished re-building ‘a08_summariseCohortOverlap.Rmd’
SUMMARY: processing the following file failed:
‘a06_summarisePatientCharacteristics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [109s/113s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(CohortCharacteristics)
>
> test_check("CohortCharacteristics")
Starting 2 test processes
[ FAIL 5 | WARN 0 | SKIP 13 | PASS 5 ]
══ Skipped tests (13) ══════════════════════════════════════════════════════════
• On CRAN (12): 'test-plotCharacteristics.R:2:3',
'test-plotLargeScaleCharacteristics.R:3:3', 'test-plotSummarised.R:2:3',
'test-plotSummarised.R:82:3', 'test-plotSummarised.R:179:3',
'test-plotSummarised.R:263:3', 'test-summariseCohortIntersect.R:2:3',
'test-summariseCohortOverlap.R:2:3', 'test-summariseCohortTiming.R:2:3',
'test-summariseLargeScaleCharacteristics.R:2:3',
'test-tableSummarised.R:2:3', 'test-tableSummarised.R:114:3'
• empty test (1): 'test-tableSummarised.R:235:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-summariseCharacteristics.R:76:3'): test summariseCharacteristics ──
Expected `... <- NULL` to run without any errors.
i Actually got a <vctrs_error_subscript_oob> with text:
Can't select columns that don't exist.
x Column `result_type` doesn't exist.
── Error ('test-summariseCharacteristics.R:88:3'): test summariseCharacteristics ──
Error in `eval(code, test_env)`: object 'result' not found
Backtrace:
▆
1. ├─testthat::expect_true(inherits(result, "summarised_result")) at test-summariseCharacteristics.R:88:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─base::inherits(result, "summarised_result")
── Failure ('test-summariseCharacteristics.R:291:3'): test empty cohort ────────
Expected `summariseCharacteristics(...)` to run without any errors.
i Actually got a <vctrs_error_subscript_oob> with text:
Can't select columns that don't exist.
x Column `result_type` doesn't exist.
── Failure ('test-summariseCharacteristics.R:301:3'): test empty cohort ────────
Expected `... <- NULL` to run without any errors.
i Actually got a <vctrs_error_subscript_oob> with text:
Can't select columns that don't exist.
x Column `result_type` doesn't exist.
── Failure ('test-summariseCharacteristics.R:308:3'): test empty cohort ────────
Expected `... <- NULL` to run without any errors.
i Actually got a <vctrs_error_subscript_oob> with text:
Can't select columns that don't exist.
x Column `result_type` doesn't exist.
[ FAIL 5 | WARN 0 | SKIP 13 | PASS 5 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc