Last updated on 2024-03-29 09:55:55 CET.
Package | ERROR | NOTE | OK |
---|---|---|---|
ACNE | 12 | ||
aroma.affymetrix | 7 | 5 | |
aroma.apd | 2 | 10 | |
aroma.cn | 2 | 10 | |
aroma.core | 12 | ||
calmate | 1 | 11 | |
dChipIO | 12 | ||
doFuture | 1 | 11 | |
future | 12 | ||
future.apply | 12 | ||
future.batchtools | 12 | ||
future.callr | 12 | ||
future.tests | 12 | ||
globals | 12 | ||
listenv | 12 | ||
matrixStats | 12 | ||
parallelly | 12 | ||
port4me | 12 | ||
profmem | 12 | ||
progressr | 12 | ||
PSCBS | 12 | ||
R.cache | 6 | 6 | |
R.devices | 12 | ||
R.filesets | 12 | ||
R.huge | 12 | ||
R.matlab | 6 | 6 | |
R.methodsS3 | 12 | ||
R.oo | 12 | ||
R.rsp | 12 | ||
R.utils | 12 | ||
seguid | 12 | ||
startup | 12 | ||
TopDom | 6 | 6 |
Current CRAN status: OK: 12
Current CRAN status: NOTE: 7, OK: 5
Version: 3.2.2
Check: installed package size
Result: NOTE
installed size is 5.9Mb
sub-directories of 1Mb or more:
R 2.3Mb
help 1.2Mb
testScripts 1.3Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-windows-x86_64
Version: 3.2.2
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'affxparser', 'oligo', 'oligoClasses', 'pdInfoBuilder',
'AffymetrixDataTestFiles'
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Version: 3.2.2
Check: Rd cross-references
Result: NOTE
Packages unavailable to check Rd xrefs: ‘affxparser’, ‘oligo’, ‘oligoClasses’
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Version: 3.2.2
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'oligo', 'oligoClasses', 'pdInfoBuilder', 'AffymetrixDataTestFiles'
Flavor: r-oldrel-macos-arm64
Version: 3.2.2
Check: Rd cross-references
Result: NOTE
Packages unavailable to check Rd xrefs: ‘oligo’, ‘oligoClasses’
Flavor: r-oldrel-macos-arm64
Current CRAN status: NOTE: 2, OK: 10
Version: 0.7.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘affxparser’
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Version: 0.7.0
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘affxparser’
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Current CRAN status: NOTE: 2, OK: 10
Version: 1.7.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘GLAD’
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Current CRAN status: NOTE: 12
Version: 3.3.1
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'sfit', 'expectile', 'HaarSeg', 'mpcbs'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-windows-x86_64
Version: 3.3.1
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'GLAD', 'sfit', 'expectile', 'HaarSeg', 'mpcbs'
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Version: 3.3.1
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘GLAD’
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Current CRAN status: ERROR: 1, OK: 11
Version: 0.13.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘aroma.core’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-arm64
Current CRAN status: OK: 12
Current CRAN status: ERROR: 1, OK: 11
Version: 1.0.1
Check: tests
Result: ERROR
Running 'foreach_dofuture,cluster-missing-doFuture-pkg.R' [2s]
Running 'foreach_dofuture,errors.R' [9s]
Running 'foreach_dofuture,globals.R' [7s]
Running 'foreach_dofuture,nested_colon.R' [1s]
Running 'foreach_dofuture,nested_dofuture.R' [14s]
Running 'foreach_dofuture,rng.R' [4s]
Running 'foreach_dofuture.R' [3s]
Running 'foreach_dopar,cluster-missing-doFuture-pkg.R' [2s]
Running 'foreach_dopar,doRNG,dopar.R' [3s]
Running 'foreach_dopar,doRNG,dorng.R' [5s]
Running 'foreach_dopar,errors.R' [7s]
Running 'foreach_dopar,globals.R' [7s]
Running 'foreach_dopar,nested_colon.R' [1s]
Running 'foreach_dopar,nested_dopar.R' [15s]
Running 'foreach_dopar,options-for-export.R' [3s]
Running 'foreach_dopar.R' [3s]
Running 'makeChunks.R' [3s]
Running 'options,nested.R' [3s]
Running 'registerDoFuture.R' [2s]
Running 'times.R' [2s]
Running 'utils.R' [1s]
Running 'withDoRNG.R' [4s]
Running the tests in 'tests/foreach_dofuture,nested_colon.R' failed.
Complete output:
> source("incl/start.R")
Loading required package: foreach
Loading required package: future
R version 4.4.0 alpha (2024-03-26 r86209 ucrt)
Platform: x86_64-w64-mingw32/x64
Running under: Windows Server 2022 x64 (build 20348)
Matrix products: default
locale:
[1] LC_COLLATE=C LC_CTYPE=German_Germany.utf8
[3] LC_MONETARY=C LC_NUMERIC=C
[5] LC_TIME=C
time zone: Europe/Berlin
tzcode source: internal
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] doFuture_1.0.1 future_1.33.2 foreach_1.5.2
loaded via a namespace (and not attached):
[1] compiler_4.4.0 parallelly_1.37.1 tools_4.4.0
[4] parallel_4.4.0 future.apply_1.11.1 listenv_0.9.1
[7] codetools_0.2-19 iterators_1.0.14 digest_0.6.35
[10] globals_0.16.3
>
> strategies <- future:::supportedStrategies()
> strategies <- setdiff(strategies, "multiprocess")
>
> message("*** doFuture - nested w/ %:% ...")
*** doFuture - nested w/ %:% ...
>
> for (strategy1 in strategies) {
+ for (strategy2 in strategies) {
+ message(sprintf("- plan(list('%s', '%s')) ...", strategy1, strategy2))
+ plan(list(a = strategy1, b = strategy2))
+ nested <- plan("list")
+
+ as <- 1:2
+ bs <- 3:1
+
+ x <- foreach(a = as) %:% foreach(b = bs) %dofuture% {
+ list(a = a, b = b, plan_b = future::plan("list"), plan = future::plan("next"))
+ }
+
+ stopifnot(length(x) == length(as))
+ for (aa in seq_along(as)) {
+ x_aa <- x[[aa]]
+ stopifnot(length(x_aa) == length(bs))
+ a <- as[aa]
+ for (bb in seq_along(bs)) {
+ x_aa_bb <- x_aa[[bb]]
+ b <- bs[bb]
+ stopifnot(
+ length(x_aa_bb) == 4L,
+ all(names(x_aa_bb) == c("a", "b", "plan_b", "plan")),
+ x_aa_bb$a == a,
+ x_aa_bb$b == b,
+ length(x_aa_bb$plan_b) == length(nested[-1]),
+ inherits(x_aa_bb$plan_b[[1]], strategy2),
+ inherits(x_aa_bb$plan, strategy2)
+ )
+ }
+ }
+
+ ## Cleanup in order make sure none of these variables exist as
+ ## proxies for missing globals of the name names
+ rm(list = c("as", "bs", "x", "nested"))
+
+ ## WORKAROUND: Shut down *nested* parallel workers as an attempt to avoid
+ ## * checking for detritus in the temp directory ... NOTE
+ ## from 'R CMD check --as-cran' when running on MS Windows. This looks
+ ## like a bug in R, cf. https://bugs.r-project.org/show_bug.cgi?id=18133
+ message("- shut down nested workers")
+ dummy <- foreach(ii = 1:nbrOfWorkers()) %dofuture% plan("sequential")
+ plan("sequential")
+
+ message(sprintf("- plan(list('%s', '%s')) ... DONE", strategy1, strategy2))
+ }
+ }
- plan(list('sequential', 'sequential')) ...
[11:06:26.534] doFuture2() ...
Running the tests in 'tests/foreach_dopar,nested_colon.R' failed.
Complete output:
> source("incl/start.R")
Loading required package: foreach
Loading required package: future
R version 4.4.0 alpha (2024-03-26 r86209 ucrt)
Platform: x86_64-w64-mingw32/x64
Running under: Windows Server 2022 x64 (build 20348)
Matrix products: default
locale:
[1] LC_COLLATE=C LC_CTYPE=German_Germany.utf8
[3] LC_MONETARY=C LC_NUMERIC=C
[5] LC_TIME=C
time zone: Europe/Berlin
tzcode source: internal
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] doFuture_1.0.1 future_1.33.2 foreach_1.5.2
loaded via a namespace (and not attached):
[1] compiler_4.4.0 parallelly_1.37.1 tools_4.4.0
[4] parallel_4.4.0 future.apply_1.11.1 listenv_0.9.1
[7] codetools_0.2-19 iterators_1.0.14 digest_0.6.35
[10] globals_0.16.3
>
> strategies <- future:::supportedStrategies()
>
> message("*** doFuture - nested w/ %:% ...")
*** doFuture - nested w/ %:% ...
>
> registerDoFuture()
>
> for (strategy1 in strategies) {
+ for (strategy2 in strategies) {
+ message(sprintf("- plan(list('%s', '%s')) ...", strategy1, strategy2))
+ plan(list(a = strategy1, b = strategy2))
+ nested <- plan("list")
+
+ as <- 1:2
+ bs <- 3:1
+
+ x <- foreach(a = as) %:% foreach(b = bs) %dopar% {
+ list(a = a, b = b, plan_b = future::plan("list"), plan = future::plan("next"))
+ }
+
+ stopifnot(length(x) == length(as))
+ for (aa in seq_along(as)) {
+ x_aa <- x[[aa]]
+ stopifnot(length(x_aa) == length(bs))
+ a <- as[aa]
+ for (bb in seq_along(bs)) {
+ x_aa_bb <- x_aa[[bb]]
+ b <- bs[bb]
+ stopifnot(
+ length(x_aa_bb) == 4L,
+ all(names(x_aa_bb) == c("a", "b", "plan_b", "plan")),
+ x_aa_bb$a == a,
+ x_aa_bb$b == b,
+ length(x_aa_bb$plan_b) == length(nested[-1]),
+ inherits(x_aa_bb$plan_b[[1]], strategy2),
+ inherits(x_aa_bb$plan, strategy2)
+ )
+ }
+ }
+
+ ## Cleanup in order make sure none of these variables exist as
+ ## proxies for missing globals of the name names
+ rm(list = c("as", "bs", "x", "nested"))
+
+ ## WORKAROUND: Shut down *nested* parallel workers as an attempt to avoid
+ ## * checking for detritus in the temp directory ... NOTE
+ ## from 'R CMD check --as-cran' when running on MS Windows. This looks
+ ## like a bug in R, cf. https://bugs.r-project.org/show_bug.cgi?id=18133
+ message("- shut down nested workers")
+ dummy <- foreach(ii = 1:nbrOfWorkers()) %dopar% plan("sequential")
+ plan("sequential")
+
+ message(sprintf("- plan(list('%s', '%s')) ... DONE", strategy1, strategy2))
+ }
+ }
- plan(list('sequential', 'sequential')) ...
[11:07:10.713] doFuture() ...
Flavor: r-devel-windows-x86_64
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: NOTE: 6, OK: 6
Version: 0.16.0
Check: Rd files
Result: NOTE
checkRd: (-1) R.cache-package.Rd:28-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) R.cache-package.Rd:31-34: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: NOTE: 6, OK: 6
Version: 3.7.0
Check: Rd files
Result: NOTE
checkRd: (-1) setOption.Matlab.Rd:37-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setOption.Matlab.Rd:40-41: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: NOTE: 6, OK: 6
Version: 0.10.1
Check: Rd files
Result: NOTE
checkRd: (-1) TopDom.Rd:21: Lost braces; missing escapes or markup?
21 | Recommended range is in {5, ..., 20}.}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64