## ----setup, include=FALSE----------------------------------------------------- # knitr::opts_chunk$set(echo = TRUE, message=FALSE, eval=FALSE) # require(ggplot2) # require(rhandsontable) # require(flextable) # require(ruminate) # # The presim variable will contain presimulated data when eval is set to true # presim_loaded = FALSE ## ----echo=FALSE, results=FALSE------------------------------------------------ # presim= list() # if(file.exists("NCA_presim.RData")){ # file.remove("NCA_presim.RData") # } ## ----echo=FALSE, results=FALSE, eval=TRUE------------------------------------- # if(file.exists("NCA_presim.RData")){ # load("NCA_presim.RData") # presim_loaded = TRUE # } # # NCA_yaml = yaml::read_yaml(system.file(package="ruminate", "templates","NCA.yaml")) ## ----eval=FALSE--------------------------------------------------------------- # formods.yaml = system.file(package="formods", "templates", "formods.yaml") # ASM.yaml = system.file(package="formods", "templates", "ASM.yaml") # UD.yaml = system.file(package="formods", "templates", "UD.yaml") # DW.yaml = system.file(package="formods", "templates", "DW.yaml") # FG.yaml = system.file(package="formods", "templates", "FG.yaml") # NCA.yaml = system.file(package="ruminate", "templates", "NCA.yaml") # MB.yaml = system.file(package="ruminate", "templates", "MB.yaml") # CTS.yaml = system.file(package="ruminate", "templates", "CTS.yaml") ## ----eval=FALSE--------------------------------------------------------------- # file.copy(from = system.file(package="ruminate", "templates", "NCA.yaml"), # to = "myNCA.yaml") ## ----eval=FALSE--------------------------------------------------------------- # NCA.yaml = "myNCA.yaml" ## ----eval=FALSE--------------------------------------------------------------- # file.copy(from = system.file(package="formods", "templates", "formods.yaml"), # to = "myformods.yaml") ## ----eval=FALSE--------------------------------------------------------------- # FM: # include: # files: # - file: # source: 'file.path(".", "templates", "report.docx")' # dest: 'file.path("config","report.docx")' # - file: # source: 'file.path(".", "templates", "report.pptx")' # dest: 'file.path("config","report.pptx")' # - file: # source: 'file.path(".", "templates", "report.yaml")' # dest: 'file.path("config","report.yaml")'