rpyANTs 0.0.5
- Added backward compatibility support for
Py39
- Fixed the missing
pow function from
numpy
- Added
atropos segments for templates
- New normalization: added
atropos segments for
normalization to templates
ANTsPyNet model locations are stored in package data
directory to comply with CRAN policy
- Always run
abp during normalization
- Added brain extraction function using base
ANTs
- Fixed issue when subject code contains underscore, causing
non-comply
BIDS format, causing parsing errors
- Added
fsaverage template for normalization
rpyANTs 0.0.4
- Added
get_xform and set_xform to get and
set qform in ANTsImage
- Removed dependence
nibabel, which might conflict with
ANTsPy on certain platforms
- Using the full path to
ANTsImage class instead of the
shortcut one from Python to avoid issues where
ANTsImage is not exported
(ANTsPyx==0.5.3)
- Using multiple imaging files and faster normalization parameters
when normalizing the native images to template
- Fixed
get_lib_fn not available under
ANTsPyx>=0.5.3
- Changed default
Python version
- Fixed bugs when mapping native
ROI to template
- Supported
YAEL processing pipeline and use
ANTsImage as inputs
- Added mapping images from native to template
- Fixed a typo in folder naming
- Method
get_native_mapping gets correct absolute
paths
- Allowed
YAEL class to add default images through
constructor
- Added intensity correction
- Exported
ensure_template and added extra
information
- Set time-out to ensure downloading the correct templates
- Added
YAEL class to support pipelines mentioned in the
paper for image registration and normalization
rpyANTs 0.0.3
- Added registration code that reproduces
Halpern lab
results
- Added
t1_preprocess to align MRI to
template using non-linear registration
- No more injection to
Python on Windows as
the memory pointer crash has been fixed by upstream developers
- No active binding to
antspynet as this
Python package might fail to load on some systems
rpyANTs 0.0.2
- Added
antspynet to the installation
- Added
ants_apply_transforms and
ants_apply_transforms_to_points to apply registration
transforms
- Added
ants_resample_image to resample images
- Added
antspynet_brain_extraction to extract brain and
strip skulls
- Added
antspynet_deep_atropos and
antspynet_desikan_killiany_tourville_labeling to segment
brain images
rpyANTs 0.0.1
- Added a
NEWS.md file to track changes to the
package.