rbioapi 0.8.2 (Current CRAN version)

• Update functions to the latest corresponding API endpoints:

  • Added STRING function:

    rba_string_enrichment_image()

  • Updated Enrichr function:

    Added option to supply background genes

  • Updated PANTHER function:

    added option to supply data frame to the enrichment/over-representation function.

  • Added UniProt functions:

    rba_uniprot_epitope(), rba_uniprot_epitope_search(), rba_uniprot_coordinates_location_genome(), rba_uniprot_proteomics_hpp(), rba_uniprot_proteomics_hpp_search(), rba_uniprot_proteomics_non_ptm(), rba_uniprot_proteomics_non_ptm_search(), rba_uniprot_proteomics_ptm(), rba_uniprot_proteomics_ptm_search(), rba_uniprot_proteomics_species(), rba_uniprot_rna_edit(), rba_uniprot_rna_edit_search()

  • Deprecated UniProt functions:

    rba_uniprot_proteomics(), rba_uniprot_proteomics_search(), rba_uniprot_ptm(), rba_uniprot_ptm_search()

  • New arguments added to existing UniProt functions:

    rba_uniprot_features_search(), rba_uniprot_coordinates_location_protein(), rba_uniprot_features()

• All scripts were reformatted to enhance readability.

• Minor improvements and fixes.

rbioapi 0.8.1

• Move to JASPAR 2024.

• Minor improvements and fixes.

rbioapi 0.8.0

• Move to STRING v12.

• Incorporate the recent changes in PANTHER and MIEAA API.

• Minor improvements and fixes.

rbioapi 0.7.9

• Stability improvements.

rbioapi 0.7.8

• Bug fixes and minor improvements.

rbioapi 0.7.7

• Bug fixes and minor improvements.

rbioapi 0.7.6

• Submitted the paper to Bioinformatics journal (DOI: 10.1093/bioinformatics/btac172).

• Added vignette article: “Over-Representation (Enrichment) Analysis””

• Updated citations information.

• Moved to JASPAR 2022.

• Added new API endpoints of UniProt and PANTHER.

• Minor internal improvements.

rbioapi 0.7.5

• Moved to STRING database version 11.5

rbioapi 0.7.4

• Bug fixes and minor improvements.

rbioapi 0.7.3

• Improved internal functions.

rbioapi 0.7.2

• JASPAR is supported.

rbioapi 0.7.1

• Enrichr is supported.

rbioapi 0.7.0

• The package was submitted to CRAN