Changes from ver 1.0-3 to ver 1.1 (2023-04-14) 1) np.boot * Added "na.rm = TRUE" when calling the quantile() function * Note that NA and NaN can arise using "stud" confidence intervals 2) np.cor.test, np.loc.test, np.reg.test * Added "na.rm" argument to handle removal of missing data * Default is TRUE which removes missing cases from input data 3) start-up message is now provided * prints ascii package name art (if interactive) and version number * also provides information about how to cite the package 4) parallel package is no longer required * parallel was previously required and automatically attached * now parallel package will only be loaded if requested 5) version numbering format change * previous versions was 3 digits (1.0-0) * new versioning is 2 digits (1.1) Changes from ver 1.0-2 to ver 1.0-3 (2021-03-01) 1) np.reg.test * Added argument "lambda" for ridge regression estimators * Improved (stabilized) inverse calculations in internals 2) psdinv (new function) * Inverse of positive semi-definite matrix * Internal function used by np.reg.test Changes from ver 1.0-1 to ver 1.0-2 (2020-10-01) 1) np.boot (new function for nonparametric bootstrapping) * Provides bootstrap estimates of standard error and bias * Computes five different bootstrap confidence intervals 2) Update to package name (to reflect bootstrap extensions) * Previous name: Nonparametric Tests via Permutations * Updated name: Nonparametric Bootstrap and Permutation Tests Changes from ver 1.0-0 to ver 1.0-1 (2020-09-10) 1) Added S3 plotting method for all nptest functions * Plots the permutation distribution and observed statistic * The rejection region is a separate color (default is red) * User input "alpha" controls rejection region (default is 0.05) 2) Added new reference to package and np.reg.test() * Only relevant for tests of regression coefficients * See Helwig (2019b) for details on regression tests * https://doi.org//10.1016/j.neuroimage.2019.116030 3) Update to the statistic df in np.cor.test for semi/partial correlations * Applicable when z is provided and independent = TRUE * Previously used a denominator that ignored the dimension of z * The correction does *not* affect the inferential results (because the correction is applied to statistic and perm.dist) 4) Update to the statistic df in np.reg.test with nuisance variables * Applicable when z is provided, homosced = TRUE, and method %in% c("HJ", "KC", "SW") * Previously used a denominator that ignored the dimension of z * The correction does *not* affect the inferential results (because the correction is applied to statistic and perm.dist) 5) Correction to example in the help file for np.cor.test * Previously used data generation code that only worked for rho = 0.5 * Updated data generation code works for all values of rho 6) Update to package name (to clarify meaning of "Nonparametric Tests") * Previous name: Nonparametric Tests * Update name: Nonparametric Tests via Permutations