version 0.7.9 - predict now also works for models with bym2 components - improvements to conjugate gradients and constrained multivariate normal sampling methods, which now also work in more cases (e.g. in case of inferred AR1 parameter, local scale parameters or bym2 components) - new argument add.eps.I of sampler_control to add a small multiple of the identity matrix to the coefficients' posterior precision matrix to avoid singularities. Both this option and the constrained multivariate normal (cMVN) sampler allow faster sampling for large structured multilevel models with many identifiability or other linear equality constraints. - linear equality and inequality constraints should now be specified using function set_constraints, which returns an environment including functions to check whether a numeric vector obeys all constraints - now imports R package collapse instead of matrixStats - new argument weights of predict method for mcdraws object, which can be used to pass population sizes of poststratification cells for the P-step of MRP (Multilevel Regression and Poststratification) - family-specific arguments should now be passed to thw family argument of create_sampler of generate_data by means of the family functions f_gaussian, f_binomial, f_negbinomial, f_poisson, f_multinomial, f_gamma - fixed a bug in prediction with type="response" for multinomial family (thanks to Sumonkanti Das for reporting) - fixed a bug where generating data for a model with only random iid effects at the data level failed - spline factor component renamed to splines to avoid naming conflict with stats::spline - further (small) efficiency improvements - more tests, documentation updates and further small bug fixes version 0.7.8 - added bym2 model component - in spatial random effect factor, argument poly.df has been replaced by graph which now also accepts neighbours lists, and argument derive.constraints has been deprecated as it is no longer needed - AR1 random effect factors used to be limited to fixed autoregressive parameter values, whereas now these parameters can be inferred by assigning them uniform or truncated normal priors - prediction for models with offsets did not always work correctly, especially for Poisson family - fixed a bug in blocked Gibbs sampler for models including a measurement model component - more control over Metropolis-Hastings proposal distributions for some parameters through new control arguments - small documentation updates - some code restructuring to facilitate future extensions - more tests version 0.7.7 - fixed a bug introduced in mcmcsae 0.7.5 that affected the outcomes of the blocked Gibbs sampler for non-gaussian models with random effects defined at the data level - user-defined equality constraints on regression coefficients or random effects now work again for blocked Gibbs sampler - default prior for shape of gamma family has been changed from gamma(1, 1) to gamma(0.1, 0.1) - more sensible default start values for gamma shape parameter - renamed model component name bart to brt, to avoid name clash with main fitting function of package dbarts - prediction now also works for models with a BART model component by specifying keepTrees=TRUE in brt() - corrected and updated the still somewhat experimental SBC_test function for simulation-based calibration; it now also supports parallel computation version 0.7.6 - blocked Gibbs sampler now also works with nonzero prior means of regression effects - fully-blocked Gibbs sampler is now the default, and argument block has been moved to sampler_control - model components for fixed and random effects now also usable to model log-variance of gaussian multilevel models - added support for random effects for log mean of gamma sampling distribution - shape parameter now given default gamma(1, 1) prior in gamma multilevel models version 0.7.5 - added gamma regression (family = "gamma") - several improvements to the "softTMVN" truncated multivariate normal sampler - added a few more methods to class tabMatrix to prepare for Matrix 1.6.2 (thanks to Mikael Jagan) - removed a few obsolete arguments from exported functions - more consistent prior specification; normal priors can now be specified using function pr_normal; arguments b0, Q0 for prior mean and precision in several model components have been deprecated - function pr_fixed for specifying a degenerate prior can now be used in more places - global option setting function set_opts has been replaced by several control functions sampler_control and chol_control that can be used to pass computational options to various functions version 0.7.4 - replaced maptools in Suggests by sf for reading shape files; now both SpatialPolygonsDataframe (for backward compatibility) and sf spatial data frames are supported - updated documentation of spatial() (in help topic 'correlation') and added an example of a CAR spatial random effects model - fixed a bug so that conjugate gradients algorithm works again - added control functions to set computational options for create_sampler and setup_CG_sampler - updated a few unit tests to be compatible with upcoming Matrix 1.6.0 - small documentation and code improvements version 0.7.3 - improved handling of out-of-sample categories by predict method - further improvements to prepare for upcoming version of Matrix package (thanks to Mikael Jagan) - clean-up of create_TMVN_sampler, in which now the method for truncated multivariate normal sampling can be specified by means of a method function that allows to pass method-specific options - added HMC ZigZag TMVN sampler - fixed a bug in soft-TMVN sampler, which did not work in case of a sparse equalities constraint matrix - option to add a Bayesian Additive Regression Trees model component to the linear predictor through package dbarts version 0.7.2 - prediction for new data now handles out-of-sample random effects (at least for iid random effect terms), so that it becomes easier to account for cluster effects from cluster samples, say - several other small improvements to predict method - small fix in preparation for upcoming Matrix 1.5-4 (thanks to Mikael Jagan) - model_matrix: allow single-level factor/character variables if no contrasts are applied - bug fix: inequality constraints did not work in combination with blocked Gibbs sampler - some parts of truncated multivariate normal samplers have been converted to C++ (using Rcpp and RcppEigen) for better performance - argument sampler of computeDesignMatrix has been removed - to_draws_array can now also convert an mcdraws object (or a subset of components from it) to a draws_array object for further analysis using R package posterior version 0.7.1 - compute_WAIC can now run using multiple cores - predict method with option ppcheck=TRUE now also works in parallel - prepare for coercion deprecations in upcoming version of Matrix package version 0.7.0 - renamed class 'draws' to 'mcdraws' to avoid name clash with R package posterior - added function to_draws_array to convert a draws component to an object of class draws_array, as defined in R package posterior - support for multinomial family - support for Poisson family, approximately, in terms of negative binomial - it is now possible to use weights to specify irregularly spaced AR1 or RW1 correlation structures - initial support for conjugate gradient coefficient sampler - experimental function for simulation-based calibration version 0.6.0 - measurement in covariates model component mec() added - new function pr_gig to specify a Generalized Inverse Gaussian prior - new argument logJacobian for create_sampler to allow comparisons of information criteria between model fits based on different transformations - added function to set labels of draws component object - data is now second argument of create_sampler and generate_data functions, in line with many model fitting functions in R - generate_data gains argument linpred, which is convenient for generating both data and latent quantities of interest for area-level models - solved a bug in function split_iters - print.dc_summary now correctly handles max.lines argument - adapted to new version of Matrix package - more input checks and small code improvements version 0.5.0 - initial CRAN release