hwep 2.0.2
- Add more options to
simgl() to increase the flexibility
of the simulations.
- Added an allopolyploid prior to the random mating tests.
hwep 2.0.1
- Updates package for compatibility with newer version of rstan.
hwep 2.0.0
- Added
rmbayes() and associated functions for Bayes
tests for random mating.
- Multiple restarts in EM algorithm for
rmlike() to fix
issues with local convergence.
- Added
rmbayesgl() for Bayes test of random mating when
using genotype likelihoods to account for genotype uncertainty. This
uses the {rstan} package as a backend.
- Added
glsim() for genotype likelihood simulation.
qqpvalue() will now allow the user to return a ggplot
object.- Added
menbayesgl() for testing Mendelian segregation
frequencies from S1 and F1 populations.
hwep 0.0.2
- New function,
qqpvalue(): A QQ-plot function for \(p\)-values on the \(-\log_{10}\)-scale.
- New function,
ts_bands(): Calculates simultaneous
confidence bands for uniform quantiles.
- New function,
f1dr(): Estimates the double reduction
rate from an F1 population via maximum likelihood.
- Edit aggregation strategy so that it works a little better to
mitigate the effects of the asymptotic approximation.
hwep 0.0.1