bayou: Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies

Fits and simulates multi-optima Ornstein-Uhlenbeck models to phylogenetic comparative data using Bayesian reversible-jump methods. See Uyeda and Harmon (2014) <doi:10.1093/sysbio/syu057>.

Version: 2.3.1
Depends: ape (≥ 3.0-6), coda, geiger (≥ 2.0), phytools, R (≥ 2.15.0)
Imports: assertthat, denstrip, fitdistrplus, foreach, graphics, grDevices, MASS, Matrix, mnormt, Rcpp (≥ 0.10.3), stats
LinkingTo: Rcpp, RcppArmadillo
Suggests: doParallel, testthat
Published: 2025-06-10
DOI: 10.32614/CRAN.package.bayou
Author: Josef C. Uyeda ORCID iD [aut, cre], Jon Eastman [ctb], Luke Harmon ORCID iD [ctb], Abhishek Hari [ctb]
Maintainer: Josef C. Uyeda <juyeda at vt.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
CRAN checks: bayou results

Documentation:

Reference manual: bayou.pdf

Downloads:

Package source: bayou_2.3.1.tar.gz
Windows binaries: r-devel: bayou_2.3.1.zip, r-release: bayou_2.3.1.zip, r-oldrel: bayou_2.3.1.zip
macOS binaries: r-release (arm64): bayou_2.3.1.tgz, r-oldrel (arm64): bayou_2.3.1.tgz, r-release (x86_64): not available, r-oldrel (x86_64): not available
Old sources: bayou archive

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