CRAN Package Check Results for Package rbiom

Last updated on 2022-06-26 11:52:41 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.3 60.29 50.83 111.12 OK
r-devel-linux-x86_64-debian-gcc 1.0.3 45.50 39.62 85.12 OK
r-devel-linux-x86_64-fedora-clang 1.0.3 165.03 OK
r-devel-linux-x86_64-fedora-gcc 1.0.3 153.09 OK
r-devel-windows-x86_64 1.0.3 67.00 0.00 67.00 FAIL
r-patched-linux-x86_64 1.0.3 49.56 48.33 97.89 OK
r-release-linux-x86_64 1.0.3 55.64 49.29 104.93 OK
r-release-macos-arm64 1.0.3 40.00 NOTE
r-release-macos-x86_64 1.0.3 56.00 OK
r-release-windows-x86_64 1.0.3 64.00 0.00 64.00 FAIL
r-oldrel-macos-arm64 1.0.3 40.00 OK
r-oldrel-macos-x86_64 1.0.3 55.00 OK
r-oldrel-windows-ix86+x86_64 1.0.3 144.00 163.00 307.00 OK

Check Details

Version: 1.0.3
Check: examples
Result: FAIL
    Check process probably crashed or hung up for 20 minutes ... killed
    Most likely this happened in the example checks (?),
    if not, ignore the following last lines of example output:
    >
    > infile <- system.file("extdata", "hmp50.bz2", package = "rbiom")
    > biom <- read.biom(infile)
    >
    > summary(phylogeny(biom))
     Length Class Mode
    edge 1956 -none- numeric
    Nnode 1 -none- numeric
    tip.label 490 -none- character
    edge.length 978 -none- numeric
    >
    >
    >
    >
    > cleanEx()
    > nameEx("print")
    > ### * print
    >
    > flush(stderr()); flush(stdout())
    >
    > ### Name: print
    > ### Title: Summarize the contents of a BIOM object
    > ### Aliases: print print.BIOM
    >
    > ### ** Examples
    >
    > library(rbiom)
    >
    > infile <- system.file("extdata", "hmp50.bz2", package = "rbiom")
    > biom <- read.biom(infile)
    ======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-devel-windows-x86_64

Version: 1.0.3
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘rhdf5’
Flavor: r-release-macos-arm64

Version: 1.0.3
Check: examples
Result: FAIL
    Check process probably crashed or hung up for 20 minutes ... killed
    Most likely this happened in the example checks (?),
    if not, ignore the following last lines of example output:
    >
    > ### ** Examples
    >
    > library(rbiom)
    >
    > infile <- system.file("extdata", "hmp50.bz2", package = "rbiom")
    > biom <- read.biom(infile)
    >
    > nsamples(biom)
    [1] 50
    >
    >
    >
    >
    > cleanEx()
    > nameEx("ntaxa")
    > ### * ntaxa
    >
    > flush(stderr()); flush(stdout())
    >
    > ### Name: ntaxa
    > ### Title: Number of taxa in a BIOM.
    > ### Aliases: ntaxa
    >
    > ### ** Examples
    >
    > library(rbiom)
    >
    > infile <- system.file("extdata", "hmp50.bz2", package = "rbiom")
    > biom <- read.biom(infile)
    ======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-release-windows-x86_64