Last updated on 2024-11-08 12:43:14 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.1 | 23.83 | 172.32 | 196.15 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.3.1 | 17.74 | 127.86 | 145.60 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.3.1 | 336.20 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.3.1 | 331.52 | OK | |||
| r-devel-windows-x86_64 | 0.3.1 | 29.00 | 191.00 | 220.00 | NOTE | |
| r-patched-linux-x86_64 | 0.3.1 | 29.45 | 161.12 | 190.57 | ERROR | |
| r-release-linux-x86_64 | 0.3.1 | 24.55 | 164.10 | 188.65 | ERROR | |
| r-release-macos-arm64 | 0.3.1 | 114.00 | OK | |||
| r-release-macos-x86_64 | 0.3.1 | 178.00 | OK | |||
| r-release-windows-x86_64 | 0.3.1 | 27.00 | 202.00 | 229.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.1 | 107.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.3.1 | 204.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.3.1 | 31.00 | 237.00 | 268.00 | ERROR |
Version: 0.3.1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
rare_curve.Rd: vegan
sample_quadrats.Rd: vegan
sim_sad.Rd: sads
spec_sample.Rd: vegan
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 0.3.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [22s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mobsim)
>
> test_check("mobsim")
Starting 2 test processes
[ FAIL 4 | WARN 0 | SKIP 11 | PASS 154 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (8): 'test_sampling-sample_quadrats().R:43:4',
'test_sampling-sample_quadrats().R:179:4',
'test_simulation_functions-poisson_process.r:2:4',
'test_simulation_functions-poisson_process.r:6:4',
'test_simulation_functions-sim_sad().R:31:4',
'test_simulation_functions-thomas_process.r:3:3',
'test_simulation_functions-thomas_process.r:7:3',
'test_simulation_functions-thomas_process.r:12:3'
• sample_quadrats() ensures that this does not happen (3):
'test_sampling-sampling_random_with_overlap.R:38:4',
'test_sampling-sampling_random_without_overlap_bruteforce.R:38:4',
'test_sampling-sampling_random_without_overlap_spatstat.R:38:4'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_patterns_of_biodiversity_functions.R:14:4'): rare_curve() - classes and dimensions are correct ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rc1, ptype = numeric(), size = N) at test_patterns_of_biodiversity_functions.R:14:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:24:4'): rare_curve() - handles 0 and NA values as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rare_curve(sad0), size = 50L) at test_patterns_of_biodiversity_functions.R:24:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:34:4'): div_rect() & div_rand_rect() - return expected value classes and length ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(div1, ptype = numeric(), size = 6) at test_patterns_of_biodiversity_functions.R:34:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_sampling-sample_quadrats().R:32:4'): dimensions are as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(comm_mat, size = 2L) at test_sampling-sample_quadrats().R:32:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 4 | WARN 0 | SKIP 11 | PASS 154 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.3.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [18s/15s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mobsim)
>
> test_check("mobsim")
Starting 2 test processes
[ FAIL 4 | WARN 0 | SKIP 11 | PASS 154 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (8): 'test_sampling-sample_quadrats().R:43:4',
'test_sampling-sample_quadrats().R:179:4',
'test_simulation_functions-poisson_process.r:2:4',
'test_simulation_functions-poisson_process.r:6:4',
'test_simulation_functions-sim_sad().R:31:4',
'test_simulation_functions-thomas_process.r:3:3',
'test_simulation_functions-thomas_process.r:7:3',
'test_simulation_functions-thomas_process.r:12:3'
• sample_quadrats() ensures that this does not happen (3):
'test_sampling-sampling_random_with_overlap.R:38:4',
'test_sampling-sampling_random_without_overlap_bruteforce.R:38:4',
'test_sampling-sampling_random_without_overlap_spatstat.R:38:4'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_patterns_of_biodiversity_functions.R:14:4'): rare_curve() - classes and dimensions are correct ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rc1, ptype = numeric(), size = N) at test_patterns_of_biodiversity_functions.R:14:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:24:4'): rare_curve() - handles 0 and NA values as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rare_curve(sad0), size = 50L) at test_patterns_of_biodiversity_functions.R:24:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:34:4'): div_rect() & div_rand_rect() - return expected value classes and length ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(div1, ptype = numeric(), size = 6) at test_patterns_of_biodiversity_functions.R:34:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_sampling-sample_quadrats().R:32:4'): dimensions are as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(comm_mat, size = 2L) at test_sampling-sample_quadrats().R:32:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 4 | WARN 0 | SKIP 11 | PASS 154 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [36s/35s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mobsim)
>
> test_check("mobsim")
Starting 2 test processes
[ FAIL 4 | WARN 1 | SKIP 11 | PASS 154 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (8): 'test_sampling-sample_quadrats().R:43:4',
'test_sampling-sample_quadrats().R:179:4',
'test_simulation_functions-poisson_process.r:2:4',
'test_simulation_functions-poisson_process.r:6:4',
'test_simulation_functions-sim_sad().R:31:4',
'test_simulation_functions-thomas_process.r:3:3',
'test_simulation_functions-thomas_process.r:7:3',
'test_simulation_functions-thomas_process.r:12:3'
• sample_quadrats() ensures that this does not happen (3):
'test_sampling-sampling_random_with_overlap.R:38:4',
'test_sampling-sampling_random_without_overlap_bruteforce.R:38:4',
'test_sampling-sampling_random_without_overlap_spatstat.R:38:4'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_patterns_of_biodiversity_functions.R:14:4'): rare_curve() - classes and dimensions are correct ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rc1, ptype = numeric(), size = N) at test_patterns_of_biodiversity_functions.R:14:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:24:4'): rare_curve() - handles 0 and NA values as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rare_curve(sad0), size = 50L) at test_patterns_of_biodiversity_functions.R:24:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:34:4'): div_rect() & div_rand_rect() - return expected value classes and length ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(div1, ptype = numeric(), size = 6) at test_patterns_of_biodiversity_functions.R:34:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_sampling-sample_quadrats().R:32:4'): dimensions are as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(comm_mat, size = 2L) at test_sampling-sample_quadrats().R:32:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 4 | WARN 1 | SKIP 11 | PASS 154 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.3.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [21s/12s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mobsim)
>
> test_check("mobsim")
Starting 2 test processes
[ FAIL 4 | WARN 1 | SKIP 11 | PASS 154 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (8): 'test_sampling-sample_quadrats().R:43:4',
'test_sampling-sample_quadrats().R:179:4',
'test_simulation_functions-poisson_process.r:2:4',
'test_simulation_functions-poisson_process.r:6:4',
'test_simulation_functions-sim_sad().R:31:4',
'test_simulation_functions-thomas_process.r:3:3',
'test_simulation_functions-thomas_process.r:7:3',
'test_simulation_functions-thomas_process.r:12:3'
• sample_quadrats() ensures that this does not happen (3):
'test_sampling-sampling_random_with_overlap.R:38:4',
'test_sampling-sampling_random_without_overlap_bruteforce.R:38:4',
'test_sampling-sampling_random_without_overlap_spatstat.R:38:4'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_patterns_of_biodiversity_functions.R:14:4'): rare_curve() - classes and dimensions are correct ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rc1, ptype = numeric(), size = N) at test_patterns_of_biodiversity_functions.R:14:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:24:4'): rare_curve() - handles 0 and NA values as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rare_curve(sad0), size = 50L) at test_patterns_of_biodiversity_functions.R:24:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:34:4'): div_rect() & div_rand_rect() - return expected value classes and length ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(div1, ptype = numeric(), size = 6) at test_patterns_of_biodiversity_functions.R:34:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_sampling-sample_quadrats().R:32:4'): dimensions are as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(comm_mat, size = 2L) at test_sampling-sample_quadrats().R:32:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 4 | WARN 1 | SKIP 11 | PASS 154 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.3.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [22s/15s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mobsim)
>
> test_check("mobsim")
Starting 2 test processes
[ FAIL 4 | WARN 0 | SKIP 11 | PASS 154 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (8): 'test_sampling-sample_quadrats().R:43:4',
'test_sampling-sample_quadrats().R:179:4',
'test_simulation_functions-poisson_process.r:2:4',
'test_simulation_functions-poisson_process.r:6:4',
'test_simulation_functions-sim_sad().R:31:4',
'test_simulation_functions-thomas_process.r:3:3',
'test_simulation_functions-thomas_process.r:7:3',
'test_simulation_functions-thomas_process.r:12:3'
• sample_quadrats() ensures that this does not happen (3):
'test_sampling-sampling_random_with_overlap.R:38:4',
'test_sampling-sampling_random_without_overlap_bruteforce.R:38:4',
'test_sampling-sampling_random_without_overlap_spatstat.R:38:4'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_patterns_of_biodiversity_functions.R:14:4'): rare_curve() - classes and dimensions are correct ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rc1, ptype = numeric(), size = N) at test_patterns_of_biodiversity_functions.R:14:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:24:4'): rare_curve() - handles 0 and NA values as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rare_curve(sad0), size = 50L) at test_patterns_of_biodiversity_functions.R:24:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:34:4'): div_rect() & div_rand_rect() - return expected value classes and length ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(div1, ptype = numeric(), size = 6) at test_patterns_of_biodiversity_functions.R:34:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_sampling-sample_quadrats().R:32:4'): dimensions are as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(comm_mat, size = 2L) at test_sampling-sample_quadrats().R:32:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 4 | WARN 0 | SKIP 11 | PASS 154 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.3.1
Check: tests
Result: ERROR
Running 'testthat.R' [16s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(mobsim)
>
> test_check("mobsim")
Starting 2 test processes
[ FAIL 4 | WARN 0 | SKIP 11 | PASS 154 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (8): 'test_sampling-sample_quadrats().R:43:4',
'test_sampling-sample_quadrats().R:179:4',
'test_simulation_functions-poisson_process.r:2:4',
'test_simulation_functions-poisson_process.r:6:4',
'test_simulation_functions-sim_sad().R:31:4',
'test_simulation_functions-thomas_process.r:3:3',
'test_simulation_functions-thomas_process.r:7:3',
'test_simulation_functions-thomas_process.r:12:3'
• sample_quadrats() ensures that this does not happen (3):
'test_sampling-sampling_random_with_overlap.R:38:4',
'test_sampling-sampling_random_without_overlap_bruteforce.R:38:4',
'test_sampling-sampling_random_without_overlap_spatstat.R:38:4'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_patterns_of_biodiversity_functions.R:14:4'): rare_curve() - classes and dimensions are correct ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rc1, ptype = numeric(), size = N) at test_patterns_of_biodiversity_functions.R:14:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:24:4'): rare_curve() - handles 0 and NA values as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rare_curve(sad0), size = 50L) at test_patterns_of_biodiversity_functions.R:24:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:34:4'): div_rect() & div_rand_rect() - return expected value classes and length ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(div1, ptype = numeric(), size = 6) at test_patterns_of_biodiversity_functions.R:34:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_sampling-sample_quadrats().R:32:4'): dimensions are as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(comm_mat, size = 2L) at test_sampling-sample_quadrats().R:32:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 4 | WARN 0 | SKIP 11 | PASS 154 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64