CRAN Package Check Results for Package metacore

Last updated on 2023-02-05 11:10:40 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.1 7.77 263.70 271.47 ERROR
r-devel-linux-x86_64-debian-gcc 0.1.1 6.42 193.44 199.86 ERROR
r-devel-linux-x86_64-fedora-clang 0.1.1 335.47 ERROR
r-devel-linux-x86_64-fedora-gcc 0.1.1 342.39 ERROR
r-devel-windows-x86_64 0.1.1 45.00 309.00 354.00 ERROR
r-patched-linux-x86_64 0.1.1 9.63 258.73 268.36 ERROR
r-release-linux-x86_64 0.1.1 7.94 260.96 268.90 ERROR
r-release-macos-arm64 0.1.1 48.00 OK
r-release-macos-x86_64 0.1.1 71.00 OK
r-release-windows-x86_64 0.1.1 25.00 187.00 212.00 OK
r-oldrel-macos-arm64 0.1.1 44.00 OK
r-oldrel-macos-x86_64 0.1.1 72.00 OK
r-oldrel-windows-ix86+x86_64 0.1.1 19.00 319.00 338.00 ERROR

Check Details

Version: 0.1.1
Check: examples
Result: ERROR
    Running examples in ‘metacore-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: check_inconsistent_labels
    > ### Title: Optional checks to consistency of metadata
    > ### Aliases: check_inconsistent_labels check_inconsistent_types
    > ### check_inconsistent_formats
    >
    > ### ** Examples
    >
    > ## EXAMPLE WITH DUPLICATES
    > # Loads in a metacore obj called metacore
    > load(metacore_example("pilot_ADaM.rda"))
    > check_inconsistent_labels(metacore)
    Error in `mutate()`:
    ℹ In argument: `across(...)`.
    ℹ In group 3: `var1 = "CHG"`.
    Caused by error in `across()`:
    ! Can't compute column `variable`.
    Caused by error in `dplyr_internal_error()`:
    Backtrace:
     ▆
     1. ├─metacore::check_inconsistent_labels(metacore)
     2. │ └─metacore:::basic_check(label, metacore)
     3. │ └─... %>% select(variable = var1, everything())
     4. ├─dplyr::select(., variable = var1, everything())
     5. ├─dplyr::summarise(...)
     6. ├─dplyr::group_by(...)
     7. ├─dplyr::mutate(...)
     8. ├─dplyr:::mutate.data.frame(...)
     9. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
     10. │ ├─base::withCallingHandlers(...)
     11. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
     12. │ ├─base::withCallingHandlers(...)
     13. │ └─mask$eval_all_mutate(quo)
     14. │ └─dplyr (local) eval()
     15. └─dplyr:::dplyr_internal_error("dplyr:::mutate_incompatible_size", `<named list>`)
     16. └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.1.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [195s/211s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(metacore)
     >
     > test_check("metacore")
    
     [ FAIL 2 | WARN 1 | SKIP 0 | PASS 67 ]
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error ('test-checks.R:16'): Test label Checks ───────────────────────────────
     <dplyr:::mutate_error/rlang_error/error/condition>
     Error in `mutate(., across(everything(), function(x) {
     attr(x, "label") <- NULL
     x
     }))`: ℹ In argument: `across(...)`.
     ℹ In group 3: `var1 = "CHG"`.
     Caused by error in `across()`:
     ! Can't compute column `variable`.
     Caused by error in `dplyr_internal_error()`:
     Backtrace:
     ▆
     1. ├─check_inconsistent_labels(metacore) %>% ... at test-checks.R:16:3
     2. ├─dplyr::arrange(., variable, label)
     3. ├─metacore::check_inconsistent_labels(metacore)
     4. │ └─metacore:::basic_check(label, metacore)
     5. │ └─... %>% select(variable = var1, everything())
     6. ├─dplyr::select(., variable = var1, everything())
     7. ├─dplyr::summarise(...)
     8. ├─dplyr::group_by(...)
     9. ├─dplyr::mutate(...)
     10. ├─dplyr:::mutate.data.frame(...)
     11. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
     12. │ ├─base::withCallingHandlers(...)
     13. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
     14. │ ├─base::withCallingHandlers(...)
     15. │ └─mask$eval_all_mutate(quo)
     16. │ └─dplyr (local) eval()
     17. ├─dplyr:::dplyr_internal_error(...)
     18. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
     19. │ └─rlang:::signal_abort(cnd, .file)
     20. │ └─base::signalCondition(cnd)
     21. ├─dplyr (local) `<fn>`(`<dpl:::__>`)
     22. │ └─rlang::abort(msg, call = call("across"), parent = cnd)
     23. │ └─rlang:::signal_abort(cnd, .file)
     24. │ └─base::signalCondition(cnd)
     25. └─dplyr (local) `<fn>`(`<rlng_rrr>`)
     26. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
     ── Error ('test-checks.R:44'): Check formats and types ─────────────────────────
     <dplyr:::mutate_error/rlang_error/error/condition>
     Error in `mutate(., across(everything(), function(x) {
     attr(x, "label") <- NULL
     x
     }))`: ℹ In argument: `across(...)`.
     ℹ In group 2: `var1 = "BASE"`.
     Caused by error in `across()`:
     ! Can't compute column `variable`.
     Caused by error in `dplyr_internal_error()`:
     Backtrace:
     ▆
     1. ├─metacore::check_inconsistent_types(metacore) at test-checks.R:44:3
     2. │ └─metacore:::basic_check(type, metacore)
     3. │ └─... %>% select(variable = var1, everything())
     4. ├─dplyr::select(., variable = var1, everything())
     5. ├─dplyr::summarise(...)
     6. ├─dplyr::group_by(...)
     7. ├─dplyr::mutate(...)
     8. ├─dplyr:::mutate.data.frame(...)
     9. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
     10. │ ├─base::withCallingHandlers(...)
     11. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
     12. │ ├─base::withCallingHandlers(...)
     13. │ └─mask$eval_all_mutate(quo)
     14. │ └─dplyr (local) eval()
     15. ├─dplyr:::dplyr_internal_error(...)
     16. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
     17. │ └─rlang:::signal_abort(cnd, .file)
     18. │ └─base::signalCondition(cnd)
     19. ├─dplyr (local) `<fn>`(`<dpl:::__>`)
     20. │ └─rlang::abort(msg, call = call("across"), parent = cnd)
     21. │ └─rlang:::signal_abort(cnd, .file)
     22. │ └─base::signalCondition(cnd)
     23. └─dplyr (local) `<fn>`(`<rlng_rrr>`)
     24. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
    
     [ FAIL 2 | WARN 1 | SKIP 0 | PASS 67 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.1.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [143s/212s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(metacore)
     >
     > test_check("metacore")
    
     [ FAIL 2 | WARN 1 | SKIP 0 | PASS 67 ]
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error ('test-checks.R:16'): Test label Checks ───────────────────────────────
     <dplyr:::mutate_error/rlang_error/error/condition>
     Error in `mutate(., across(everything(), function(x) {
     attr(x, "label") <- NULL
     x
     }))`: ℹ In argument: `across(...)`.
     ℹ In group 3: `var1 = "CHG"`.
     Caused by error in `across()`:
     ! Can't compute column `variable`.
     Caused by error in `dplyr_internal_error()`:
     Backtrace:
     ▆
     1. ├─check_inconsistent_labels(metacore) %>% ... at test-checks.R:16:3
     2. ├─dplyr::arrange(., variable, label)
     3. ├─metacore::check_inconsistent_labels(metacore)
     4. │ └─metacore:::basic_check(label, metacore)
     5. │ └─... %>% select(variable = var1, everything())
     6. ├─dplyr::select(., variable = var1, everything())
     7. ├─dplyr::summarise(...)
     8. ├─dplyr::group_by(...)
     9. ├─dplyr::mutate(...)
     10. ├─dplyr:::mutate.data.frame(...)
     11. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
     12. │ ├─base::withCallingHandlers(...)
     13. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
     14. │ ├─base::withCallingHandlers(...)
     15. │ └─mask$eval_all_mutate(quo)
     16. │ └─dplyr (local) eval()
     17. ├─dplyr:::dplyr_internal_error(...)
     18. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
     19. │ └─rlang:::signal_abort(cnd, .file)
     20. │ └─base::signalCondition(cnd)
     21. ├─dplyr (local) `<fn>`(`<dpl:::__>`)
     22. │ └─rlang::abort(msg, call = call("across"), parent = cnd)
     23. │ └─rlang:::signal_abort(cnd, .file)
     24. │ └─base::signalCondition(cnd)
     25. └─dplyr (local) `<fn>`(`<rlng_rrr>`)
     26. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
     ── Error ('test-checks.R:44'): Check formats and types ─────────────────────────
     <dplyr:::mutate_error/rlang_error/error/condition>
     Error in `mutate(., across(everything(), function(x) {
     attr(x, "label") <- NULL
     x
     }))`: ℹ In argument: `across(...)`.
     ℹ In group 2: `var1 = "BASE"`.
     Caused by error in `across()`:
     ! Can't compute column `variable`.
     Caused by error in `dplyr_internal_error()`:
     Backtrace:
     ▆
     1. ├─metacore::check_inconsistent_types(metacore) at test-checks.R:44:3
     2. │ └─metacore:::basic_check(type, metacore)
     3. │ └─... %>% select(variable = var1, everything())
     4. ├─dplyr::select(., variable = var1, everything())
     5. ├─dplyr::summarise(...)
     6. ├─dplyr::group_by(...)
     7. ├─dplyr::mutate(...)
     8. ├─dplyr:::mutate.data.frame(...)
     9. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
     10. │ ├─base::withCallingHandlers(...)
     11. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
     12. │ ├─base::withCallingHandlers(...)
     13. │ └─mask$eval_all_mutate(quo)
     14. │ └─dplyr (local) eval()
     15. ├─dplyr:::dplyr_internal_error(...)
     16. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
     17. │ └─rlang:::signal_abort(cnd, .file)
     18. │ └─base::signalCondition(cnd)
     19. ├─dplyr (local) `<fn>`(`<dpl:::__>`)
     20. │ └─rlang::abort(msg, call = call("across"), parent = cnd)
     21. │ └─rlang:::signal_abort(cnd, .file)
     22. │ └─base::signalCondition(cnd)
     23. └─dplyr (local) `<fn>`(`<rlng_rrr>`)
     24. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
    
     [ FAIL 2 | WARN 1 | SKIP 0 | PASS 67 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.1
Check: examples
Result: ERROR
    Running examples in ‘metacore-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: check_inconsistent_labels
    > ### Title: Optional checks to consistency of metadata
    > ### Aliases: check_inconsistent_labels check_inconsistent_types
    > ### check_inconsistent_formats
    >
    > ### ** Examples
    >
    > ## EXAMPLE WITH DUPLICATES
    > # Loads in a metacore obj called metacore
    > load(metacore_example("pilot_ADaM.rda"))
    > check_inconsistent_labels(metacore)
    Error in `mutate()`:
    ℹ In argument: `across(...)`.
    ℹ In group 3: `var1 = "CHG"`.
    Caused by error in `across()`:
    ! Can't compute column `variable`.
    Caused by error in `dplyr_internal_error()`:
    Backtrace:
     ▆
     1. ├─metacore::check_inconsistent_labels(metacore)
     2. │ └─metacore:::basic_check(label, metacore)
     3. │ └─... %>% select(variable = var1, everything())
     4. ├─dplyr::select(., variable = var1, everything())
     5. ├─dplyr::summarise(...)
     6. ├─dplyr::group_by(...)
     7. ├─dplyr::mutate(...)
     8. ├─dplyr:::mutate.data.frame(...)
     9. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
     10. │ ├─base::withCallingHandlers(...)
     11. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
     12. │ ├─base::withCallingHandlers(...)
     13. │ └─mask$eval_all_mutate(quo)
     14. │ └─dplyr (local) eval()
     15. └─dplyr:::dplyr_internal_error("dplyr:::mutate_incompatible_size", `<named list>`)
     16. └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Version: 0.1.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [238s/450s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(metacore)
     >
     > test_check("metacore")
    
     [ FAIL 2 | WARN 1 | SKIP 0 | PASS 67 ]
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error ('test-checks.R:16'): Test label Checks ───────────────────────────────
     <dplyr:::mutate_error/rlang_error/error/condition>
     Error in `mutate(., across(everything(), function(x) {
     attr(x, "label") <- NULL
     x
     }))`: ℹ In argument: `across(...)`.
     ℹ In group 3: `var1 = "CHG"`.
     Caused by error in `across()`:
     ! Can't compute column `variable`.
     Caused by error in `dplyr_internal_error()`:
     Backtrace:
     ▆
     1. ├─check_inconsistent_labels(metacore) %>% ... at test-checks.R:16:3
     2. ├─dplyr::arrange(., variable, label)
     3. ├─metacore::check_inconsistent_labels(metacore)
     4. │ └─metacore:::basic_check(label, metacore)
     5. │ └─... %>% select(variable = var1, everything())
     6. ├─dplyr::select(., variable = var1, everything())
     7. ├─dplyr::summarise(...)
     8. ├─dplyr::group_by(...)
     9. ├─dplyr::mutate(...)
     10. ├─dplyr:::mutate.data.frame(...)
     11. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
     12. │ ├─base::withCallingHandlers(...)
     13. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
     14. │ ├─base::withCallingHandlers(...)
     15. │ └─mask$eval_all_mutate(quo)
     16. │ └─dplyr (local) eval()
     17. ├─dplyr:::dplyr_internal_error(...)
     18. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
     19. │ └─rlang:::signal_abort(cnd, .file)
     20. │ └─base::signalCondition(cnd)
     21. ├─dplyr (local) `<fn>`(`<dpl:::__>`)
     22. │ └─rlang::abort(msg, call = call("across"), parent = cnd)
     23. │ └─rlang:::signal_abort(cnd, .file)
     24. │ └─base::signalCondition(cnd)
     25. └─dplyr (local) `<fn>`(`<rlng_rrr>`)
     26. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
     ── Error ('test-checks.R:44'): Check formats and types ─────────────────────────
     <dplyr:::mutate_error/rlang_error/error/condition>
     Error in `mutate(., across(everything(), function(x) {
     attr(x, "label") <- NULL
     x
     }))`: ℹ In argument: `across(...)`.
     ℹ In group 2: `var1 = "BASE"`.
     Caused by error in `across()`:
     ! Can't compute column `variable`.
     Caused by error in `dplyr_internal_error()`:
     Backtrace:
     ▆
     1. ├─metacore::check_inconsistent_types(metacore) at test-checks.R:44:3
     2. │ └─metacore:::basic_check(type, metacore)
     3. │ └─... %>% select(variable = var1, everything())
     4. ├─dplyr::select(., variable = var1, everything())
     5. ├─dplyr::summarise(...)
     6. ├─dplyr::group_by(...)
     7. ├─dplyr::mutate(...)
     8. ├─dplyr:::mutate.data.frame(...)
     9. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
     10. │ ├─base::withCallingHandlers(...)
     11. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
     12. │ ├─base::withCallingHandlers(...)
     13. │ └─mask$eval_all_mutate(quo)
     14. │ └─dplyr (local) eval()
     15. ├─dplyr:::dplyr_internal_error(...)
     16. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
     17. │ └─rlang:::signal_abort(cnd, .file)
     18. │ └─base::signalCondition(cnd)
     19. ├─dplyr (local) `<fn>`(`<dpl:::__>`)
     20. │ └─rlang::abort(msg, call = call("across"), parent = cnd)
     21. │ └─rlang:::signal_abort(cnd, .file)
     22. │ └─base::signalCondition(cnd)
     23. └─dplyr (local) `<fn>`(`<rlng_rrr>`)
     24. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
    
     [ FAIL 2 | WARN 1 | SKIP 0 | PASS 67 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.1.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [239s/288s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(metacore)
     >
     > test_check("metacore")
    
     [ FAIL 2 | WARN 1 | SKIP 0 | PASS 67 ]
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error ('test-checks.R:16'): Test label Checks ───────────────────────────────
     <dplyr:::mutate_error/rlang_error/error/condition>
     Error in `mutate(., across(everything(), function(x) {
     attr(x, "label") <- NULL
     x
     }))`: ℹ In argument: `across(...)`.
     ℹ In group 3: `var1 = "CHG"`.
     Caused by error in `across()`:
     ! Can't compute column `variable`.
     Caused by error in `dplyr_internal_error()`:
     Backtrace:
     ▆
     1. ├─check_inconsistent_labels(metacore) %>% ... at test-checks.R:16:3
     2. ├─dplyr::arrange(., variable, label)
     3. ├─metacore::check_inconsistent_labels(metacore)
     4. │ └─metacore:::basic_check(label, metacore)
     5. │ └─... %>% select(variable = var1, everything())
     6. ├─dplyr::select(., variable = var1, everything())
     7. ├─dplyr::summarise(...)
     8. ├─dplyr::group_by(...)
     9. ├─dplyr::mutate(...)
     10. ├─dplyr:::mutate.data.frame(...)
     11. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
     12. │ ├─base::withCallingHandlers(...)
     13. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
     14. │ ├─base::withCallingHandlers(...)
     15. │ └─mask$eval_all_mutate(quo)
     16. │ └─dplyr (local) eval()
     17. ├─dplyr:::dplyr_internal_error(...)
     18. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
     19. │ └─rlang:::signal_abort(cnd, .file)
     20. │ └─base::signalCondition(cnd)
     21. ├─dplyr (local) `<fn>`(`<dpl:::__>`)
     22. │ └─rlang::abort(msg, call = call("across"), parent = cnd)
     23. │ └─rlang:::signal_abort(cnd, .file)
     24. │ └─base::signalCondition(cnd)
     25. └─dplyr (local) `<fn>`(`<rlng_rrr>`)
     26. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
     ── Error ('test-checks.R:44'): Check formats and types ─────────────────────────
     <dplyr:::mutate_error/rlang_error/error/condition>
     Error in `mutate(., across(everything(), function(x) {
     attr(x, "label") <- NULL
     x
     }))`: ℹ In argument: `across(...)`.
     ℹ In group 2: `var1 = "BASE"`.
     Caused by error in `across()`:
     ! Can't compute column `variable`.
     Caused by error in `dplyr_internal_error()`:
     Backtrace:
     ▆
     1. ├─metacore::check_inconsistent_types(metacore) at test-checks.R:44:3
     2. │ └─metacore:::basic_check(type, metacore)
     3. │ └─... %>% select(variable = var1, everything())
     4. ├─dplyr::select(., variable = var1, everything())
     5. ├─dplyr::summarise(...)
     6. ├─dplyr::group_by(...)
     7. ├─dplyr::mutate(...)
     8. ├─dplyr:::mutate.data.frame(...)
     9. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
     10. │ ├─base::withCallingHandlers(...)
     11. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
     12. │ ├─base::withCallingHandlers(...)
     13. │ └─mask$eval_all_mutate(quo)
     14. │ └─dplyr (local) eval()
     15. ├─dplyr:::dplyr_internal_error(...)
     16. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
     17. │ └─rlang:::signal_abort(cnd, .file)
     18. │ └─base::signalCondition(cnd)
     19. ├─dplyr (local) `<fn>`(`<dpl:::__>`)
     20. │ └─rlang::abort(msg, call = call("across"), parent = cnd)
     21. │ └─rlang:::signal_abort(cnd, .file)
     22. │ └─base::signalCondition(cnd)
     23. └─dplyr (local) `<fn>`(`<rlng_rrr>`)
     24. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
    
     [ FAIL 2 | WARN 1 | SKIP 0 | PASS 67 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.1.1
Check: tests
Result: ERROR
     Running 'testthat.R' [204s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(metacore)
     >
     > test_check("metacore")
    
     [ FAIL 2 | WARN 1 | SKIP 0 | PASS 67 ]
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error ('test-checks.R:16'): Test label Checks ───────────────────────────────
     <dplyr:::mutate_error/rlang_error/error/condition>
     Error in `mutate(., across(everything(), function(x) {
     attr(x, "label") <- NULL
     x
     }))`: ℹ In argument: `across(...)`.
     ℹ In group 3: `var1 = "CHG"`.
     Caused by error in `across()`:
     ! Can't compute column `variable`.
     Caused by error in `dplyr_internal_error()`:
     Backtrace:
     ▆
     1. ├─check_inconsistent_labels(metacore) %>% ... at test-checks.R:16:3
     2. ├─dplyr::arrange(., variable, label)
     3. ├─metacore::check_inconsistent_labels(metacore)
     4. │ └─metacore:::basic_check(label, metacore)
     5. │ └─... %>% select(variable = var1, everything())
     6. ├─dplyr::select(., variable = var1, everything())
     7. ├─dplyr::summarise(...)
     8. ├─dplyr::group_by(...)
     9. ├─dplyr::mutate(...)
     10. ├─dplyr:::mutate.data.frame(...)
     11. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
     12. │ ├─base::withCallingHandlers(...)
     13. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
     14. │ ├─base::withCallingHandlers(...)
     15. │ └─mask$eval_all_mutate(quo)
     16. │ └─dplyr (local) eval()
     17. ├─dplyr:::dplyr_internal_error(...)
     18. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
     19. │ └─rlang:::signal_abort(cnd, .file)
     20. │ └─base::signalCondition(cnd)
     21. ├─dplyr (local) `<fn>`(`<dpl:::__>`)
     22. │ └─rlang::abort(msg, call = call("across"), parent = cnd)
     23. │ └─rlang:::signal_abort(cnd, .file)
     24. │ └─base::signalCondition(cnd)
     25. └─dplyr (local) `<fn>`(`<rlng_rrr>`)
     26. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
     ── Error ('test-checks.R:44'): Check formats and types ─────────────────────────
     <dplyr:::mutate_error/rlang_error/error/condition>
     Error in `mutate(., across(everything(), function(x) {
     attr(x, "label") <- NULL
     x
     }))`: ℹ In argument: `across(...)`.
     ℹ In group 2: `var1 = "BASE"`.
     Caused by error in `across()`:
     ! Can't compute column `variable`.
     Caused by error in `dplyr_internal_error()`:
     Backtrace:
     ▆
     1. ├─metacore::check_inconsistent_types(metacore) at test-checks.R:44:3
     2. │ └─metacore:::basic_check(type, metacore)
     3. │ └─... %>% select(variable = var1, everything())
     4. ├─dplyr::select(., variable = var1, everything())
     5. ├─dplyr::summarise(...)
     6. ├─dplyr::group_by(...)
     7. ├─dplyr::mutate(...)
     8. ├─dplyr:::mutate.data.frame(...)
     9. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
     10. │ ├─base::withCallingHandlers(...)
     11. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
     12. │ ├─base::withCallingHandlers(...)
     13. │ └─mask$eval_all_mutate(quo)
     14. │ └─dplyr (local) eval()
     15. ├─dplyr:::dplyr_internal_error(...)
     16. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
     17. │ └─rlang:::signal_abort(cnd, .file)
     18. │ └─base::signalCondition(cnd)
     19. ├─dplyr (local) `<fn>`(`<dpl:::__>`)
     20. │ └─rlang::abort(msg, call = call("across"), parent = cnd)
     21. │ └─rlang:::signal_abort(cnd, .file)
     22. │ └─base::signalCondition(cnd)
     23. └─dplyr (local) `<fn>`(`<rlng_rrr>`)
     24. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
    
     [ FAIL 2 | WARN 1 | SKIP 0 | PASS 67 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-windows-x86_64

Version: 0.1.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [191s/226s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(metacore)
     >
     > test_check("metacore")
    
     [ FAIL 2 | WARN 1 | SKIP 0 | PASS 67 ]
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error ('test-checks.R:16'): Test label Checks ───────────────────────────────
     <dplyr:::mutate_error/rlang_error/error/condition>
     Error in `mutate(., across(everything(), function(x) {
     attr(x, "label") <- NULL
     x
     }))`: ℹ In argument: `across(...)`.
     ℹ In group 3: `var1 = "CHG"`.
     Caused by error in `across()`:
     ! Can't compute column `variable`.
     Caused by error in `dplyr_internal_error()`:
     Backtrace:
     ▆
     1. ├─check_inconsistent_labels(metacore) %>% ... at test-checks.R:16:3
     2. ├─dplyr::arrange(., variable, label)
     3. ├─metacore::check_inconsistent_labels(metacore)
     4. │ └─metacore:::basic_check(label, metacore)
     5. │ └─... %>% select(variable = var1, everything())
     6. ├─dplyr::select(., variable = var1, everything())
     7. ├─dplyr::summarise(...)
     8. ├─dplyr::group_by(...)
     9. ├─dplyr::mutate(...)
     10. ├─dplyr:::mutate.data.frame(...)
     11. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
     12. │ ├─base::withCallingHandlers(...)
     13. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
     14. │ ├─base::withCallingHandlers(...)
     15. │ └─mask$eval_all_mutate(quo)
     16. │ └─dplyr (local) eval()
     17. ├─dplyr:::dplyr_internal_error(...)
     18. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
     19. │ └─rlang:::signal_abort(cnd, .file)
     20. │ └─base::signalCondition(cnd)
     21. ├─dplyr (local) `<fn>`(`<dpl:::__>`)
     22. │ └─rlang::abort(msg, call = call("across"), parent = cnd)
     23. │ └─rlang:::signal_abort(cnd, .file)
     24. │ └─base::signalCondition(cnd)
     25. └─dplyr (local) `<fn>`(`<rlng_rrr>`)
     26. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
     ── Error ('test-checks.R:44'): Check formats and types ─────────────────────────
     <dplyr:::mutate_error/rlang_error/error/condition>
     Error in `mutate(., across(everything(), function(x) {
     attr(x, "label") <- NULL
     x
     }))`: ℹ In argument: `across(...)`.
     ℹ In group 2: `var1 = "BASE"`.
     Caused by error in `across()`:
     ! Can't compute column `variable`.
     Caused by error in `dplyr_internal_error()`:
     Backtrace:
     ▆
     1. ├─metacore::check_inconsistent_types(metacore) at test-checks.R:44:3
     2. │ └─metacore:::basic_check(type, metacore)
     3. │ └─... %>% select(variable = var1, everything())
     4. ├─dplyr::select(., variable = var1, everything())
     5. ├─dplyr::summarise(...)
     6. ├─dplyr::group_by(...)
     7. ├─dplyr::mutate(...)
     8. ├─dplyr:::mutate.data.frame(...)
     9. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
     10. │ ├─base::withCallingHandlers(...)
     11. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
     12. │ ├─base::withCallingHandlers(...)
     13. │ └─mask$eval_all_mutate(quo)
     14. │ └─dplyr (local) eval()
     15. ├─dplyr:::dplyr_internal_error(...)
     16. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
     17. │ └─rlang:::signal_abort(cnd, .file)
     18. │ └─base::signalCondition(cnd)
     19. ├─dplyr (local) `<fn>`(`<dpl:::__>`)
     20. │ └─rlang::abort(msg, call = call("across"), parent = cnd)
     21. │ └─rlang:::signal_abort(cnd, .file)
     22. │ └─base::signalCondition(cnd)
     23. └─dplyr (local) `<fn>`(`<rlng_rrr>`)
     24. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
    
     [ FAIL 2 | WARN 1 | SKIP 0 | PASS 67 ]
     Error: Test failures
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.1.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [196s/248s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(metacore)
     >
     > test_check("metacore")
    
     [ FAIL 2 | WARN 1 | SKIP 0 | PASS 67 ]
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error ('test-checks.R:16'): Test label Checks ───────────────────────────────
     <dplyr:::mutate_error/rlang_error/error/condition>
     Error in `mutate(., across(everything(), function(x) {
     attr(x, "label") <- NULL
     x
     }))`: ℹ In argument: `across(...)`.
     ℹ In group 3: `var1 = "CHG"`.
     Caused by error in `across()`:
     ! Can't compute column `variable`.
     Caused by error in `dplyr_internal_error()`:
     Backtrace:
     ▆
     1. ├─check_inconsistent_labels(metacore) %>% ... at test-checks.R:16:3
     2. ├─dplyr::arrange(., variable, label)
     3. ├─metacore::check_inconsistent_labels(metacore)
     4. │ └─metacore:::basic_check(label, metacore)
     5. │ └─... %>% select(variable = var1, everything())
     6. ├─dplyr::select(., variable = var1, everything())
     7. ├─dplyr::summarise(...)
     8. ├─dplyr::group_by(...)
     9. ├─dplyr::mutate(...)
     10. ├─dplyr:::mutate.data.frame(...)
     11. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
     12. │ ├─base::withCallingHandlers(...)
     13. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
     14. │ ├─base::withCallingHandlers(...)
     15. │ └─mask$eval_all_mutate(quo)
     16. │ └─dplyr (local) eval()
     17. ├─dplyr:::dplyr_internal_error(...)
     18. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
     19. │ └─rlang:::signal_abort(cnd, .file)
     20. │ └─base::signalCondition(cnd)
     21. ├─dplyr (local) `<fn>`(`<dpl:::__>`)
     22. │ └─rlang::abort(msg, call = call("across"), parent = cnd)
     23. │ └─rlang:::signal_abort(cnd, .file)
     24. │ └─base::signalCondition(cnd)
     25. └─dplyr (local) `<fn>`(`<rlng_rrr>`)
     26. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
     ── Error ('test-checks.R:44'): Check formats and types ─────────────────────────
     <dplyr:::mutate_error/rlang_error/error/condition>
     Error in `mutate(., across(everything(), function(x) {
     attr(x, "label") <- NULL
     x
     }))`: ℹ In argument: `across(...)`.
     ℹ In group 2: `var1 = "BASE"`.
     Caused by error in `across()`:
     ! Can't compute column `variable`.
     Caused by error in `dplyr_internal_error()`:
     Backtrace:
     ▆
     1. ├─metacore::check_inconsistent_types(metacore) at test-checks.R:44:3
     2. │ └─metacore:::basic_check(type, metacore)
     3. │ └─... %>% select(variable = var1, everything())
     4. ├─dplyr::select(., variable = var1, everything())
     5. ├─dplyr::summarise(...)
     6. ├─dplyr::group_by(...)
     7. ├─dplyr::mutate(...)
     8. ├─dplyr:::mutate.data.frame(...)
     9. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
     10. │ ├─base::withCallingHandlers(...)
     11. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
     12. │ ├─base::withCallingHandlers(...)
     13. │ └─mask$eval_all_mutate(quo)
     14. │ └─dplyr (local) eval()
     15. ├─dplyr:::dplyr_internal_error(...)
     16. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
     17. │ └─rlang:::signal_abort(cnd, .file)
     18. │ └─base::signalCondition(cnd)
     19. ├─dplyr (local) `<fn>`(`<dpl:::__>`)
     20. │ └─rlang::abort(msg, call = call("across"), parent = cnd)
     21. │ └─rlang:::signal_abort(cnd, .file)
     22. │ └─base::signalCondition(cnd)
     23. └─dplyr (local) `<fn>`(`<rlng_rrr>`)
     24. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
    
     [ FAIL 2 | WARN 1 | SKIP 0 | PASS 67 ]
     Error: Test failures
     Execution halted
Flavor: r-release-linux-x86_64

Version: 0.1.1
Check: examples
Result: ERROR
    Running examples in 'metacore-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: check_inconsistent_labels
    > ### Title: Optional checks to consistency of metadata
    > ### Aliases: check_inconsistent_labels check_inconsistent_types
    > ### check_inconsistent_formats
    >
    > ### ** Examples
    >
    > ## EXAMPLE WITH DUPLICATES
    > # Loads in a metacore obj called metacore
    > load(metacore_example("pilot_ADaM.rda"))
    > check_inconsistent_labels(metacore)
    Error in `mutate()`:
    i In argument: `across(...)`.
    i In group 3: `var1 = "CHG"`.
    Caused by error in `across()`:
    ! Can't compute column `variable`.
    Caused by error in `dplyr_internal_error()`:
    Backtrace:
     x
     1. +-metacore::check_inconsistent_labels(metacore)
     2. | \-metacore:::basic_check(label, metacore)
     3. | \-... %>% select(variable = var1, everything())
     4. +-dplyr::select(., variable = var1, everything())
     5. +-dplyr::summarise(...)
     6. +-dplyr::group_by(...)
     7. +-dplyr::mutate(...)
     8. +-dplyr:::mutate.data.frame(...)
     9. | \-dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
     10. | +-base::withCallingHandlers(...)
     11. | \-dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
     12. | +-base::withCallingHandlers(...)
     13. | \-mask$eval_all_mutate(quo)
     14. | \-dplyr (local) eval()
     15. \-dplyr:::dplyr_internal_error("dplyr:::mutate_incompatible_size", `<named list>`)
     16. \-rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.1.1
Check: tests
Result: ERROR
     Running 'testthat.R' [221s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(metacore)
     >
     > test_check("metacore")
    
     [ FAIL 2 | WARN 1 | SKIP 0 | PASS 67 ]
    
     == Failed tests ================================================================
     -- Error ('test-checks.R:16'): Test label Checks -------------------------------
     <dplyr:::mutate_error/rlang_error/error/condition>
     Error in `mutate(., across(everything(), function(x) {
     attr(x, "label") <- NULL
     x
     }))`: i In argument: `across(...)`.
     i In group 3: `var1 = "CHG"`.
     Caused by error in `across()`:
     ! Can't compute column `variable`.
     Caused by error in `dplyr_internal_error()`:
     Backtrace:
     x
     1. +-check_inconsistent_labels(metacore) %>% ... at test-checks.R:16:3
     2. +-dplyr::arrange(., variable, label)
     3. +-metacore::check_inconsistent_labels(metacore)
     4. | \-metacore:::basic_check(label, metacore)
     5. | \-... %>% select(variable = var1, everything())
     6. +-dplyr::select(., variable = var1, everything())
     7. +-dplyr::summarise(...)
     8. +-dplyr::group_by(...)
     9. +-dplyr::mutate(...)
     10. +-dplyr:::mutate.data.frame(...)
     11. | \-dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
     12. | +-base::withCallingHandlers(...)
     13. | \-dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
     14. | +-base::withCallingHandlers(...)
     15. | \-mask$eval_all_mutate(quo)
     16. | \-dplyr (local) eval()
     17. +-dplyr:::dplyr_internal_error(...)
     18. | \-rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
     19. | \-rlang:::signal_abort(cnd, .file)
     20. | \-base::signalCondition(cnd)
     21. +-dplyr (local) `<fn>`(`<dpl:::__>`)
     22. | \-rlang::abort(msg, call = call("across"), parent = cnd)
     23. | \-rlang:::signal_abort(cnd, .file)
     24. | \-base::signalCondition(cnd)
     25. \-dplyr (local) `<fn>`(`<rlng_rrr>`)
     26. \-rlang::abort(message, class = error_class, parent = parent, call = error_call)
     -- Error ('test-checks.R:44'): Check formats and types -------------------------
     <dplyr:::mutate_error/rlang_error/error/condition>
     Error in `mutate(., across(everything(), function(x) {
     attr(x, "label") <- NULL
     x
     }))`: i In argument: `across(...)`.
     i In group 2: `var1 = "BASE"`.
     Caused by error in `across()`:
     ! Can't compute column `variable`.
     Caused by error in `dplyr_internal_error()`:
     Backtrace:
     x
     1. +-metacore::check_inconsistent_types(metacore) at test-checks.R:44:3
     2. | \-metacore:::basic_check(type, metacore)
     3. | \-... %>% select(variable = var1, everything())
     4. +-dplyr::select(., variable = var1, everything())
     5. +-dplyr::summarise(...)
     6. +-dplyr::group_by(...)
     7. +-dplyr::mutate(...)
     8. +-dplyr:::mutate.data.frame(...)
     9. | \-dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
     10. | +-base::withCallingHandlers(...)
     11. | \-dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
     12. | +-base::withCallingHandlers(...)
     13. | \-mask$eval_all_mutate(quo)
     14. | \-dplyr (local) eval()
     15. +-dplyr:::dplyr_internal_error(...)
     16. | \-rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
     17. | \-rlang:::signal_abort(cnd, .file)
     18. | \-base::signalCondition(cnd)
     19. +-dplyr (local) `<fn>`(`<dpl:::__>`)
     20. | \-rlang::abort(msg, call = call("across"), parent = cnd)
     21. | \-rlang:::signal_abort(cnd, .file)
     22. | \-base::signalCondition(cnd)
     23. \-dplyr (local) `<fn>`(`<rlng_rrr>`)
     24. \-rlang::abort(message, class = error_class, parent = parent, call = error_call)
    
     [ FAIL 2 | WARN 1 | SKIP 0 | PASS 67 ]
     Error: Test failures
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64