Last updated on 2025-07-15 12:49:50 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| gdalraster | 1 | 3 | 9 |
Current CRAN status: ERROR: 1, NOTE: 3, OK: 9
Version: 2.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘gdal-config-quick-ref.Rmd’ using rmarkdown
--- finished re-building ‘gdal-config-quick-ref.Rmd’
--- re-building ‘raster-api-tutorial.Rmd’ using rmarkdown
--- finished re-building ‘raster-api-tutorial.Rmd’
--- re-building ‘raster-attribute-tables.Rmd’ using rmarkdown
--- finished re-building ‘raster-attribute-tables.Rmd’
--- re-building ‘vector-api-overview.Rmd’ using rmarkdown
ERROR 1: Reprojection failed
ERROR 1: Reprojection failed
ERROR 1: Reprojection failed
ERROR 1: Reprojection failed
[gannet:754049:0:756679] Caught signal 11 (Segmentation fault: address not mapped to object at address 0x5994)
ERROR 1: Reprojection failed
ERROR 1: Reprojection failed
ERROR 1: Reprojection failed
ERROR 1: Reprojection failed
*** caught segfault ***
address (nil), cause 'memory not mapped'
ERROR 1: Reprojection failed
ERROR 1: Reprojection failed
Traceback:
1: ogr2ogr(src_dsn, out_dsn, src_layers, cl_arg = args, open_options = src_open_options)
2: ogr_reproject(ynp_dsn, "points_of_interest", mtbs_dsn, srs_mtsp)
3: eval(expr, envir)
4: eval(expr, envir)
5: withVisible(eval(expr, envir))
6: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
7: eval(call)
8: eval(call)
9: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
10: doWithOneRestart(return(expr), restart)
11: withOneRestart(expr, restarts[[1L]])
12: withRestartList(expr, restarts[-nr])
13: doWithOneRestart(return(expr), restart)
14: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
15: withRestartList(expr, restarts)
ERROR 1: Reprojection failed
16: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
17: evaluate::evaluate(...)
18: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
19: in_dir(input_dir(), expr)
20: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
21: eng_r(options)
22: block_exec(params)
23: call_block(x)
24: process_group(group)
25: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } })
26: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
27: process_file(text, output)
28: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
29: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
30: vweave_rmarkdown(...)
31: engine$weave(file, quiet = quiet, encoding = enc)
32: doTryCatch(return(expr), name, parentenv, handler)
33: tryCatchOne(expr, names, parentenv, handlers[[1L]])
34: tryCatchList(expr, classes, parentenv, handlers)
35: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
36: tools:::.buildOneVignette("vector-api-overview.Rmd", "/data/gannet/ripley/R/packages/tests-clang/gdalraster.Rcheck/vign_test/gdalraster", TRUE, FALSE, "vector-api-overview", "UTF-8", "/tmp/RtmpcBbBo2/working_dir/RtmpOx7oDo/fileb72c13fee58c6.rds")
An irrecoverable exception occurred. R is aborting now ...
==== backtrace (tid: 756679) ====
0 /lib64/libucs.so.0(ucs_handle_error+0x2e4) [0x7ffb1dfb2df4]
1 /lib64/libucs.so.0(+0x17aed) [0x7ffb1dfb4aed]
2 /lib64/libucs.so.0(+0x17cbd) [0x7ffb1dfb4cbd]
3 /lib64/libc.so.6(+0x19c30) [0x7ffb34027c30]
4 /lib64/libc.so.6(memcpy+0x23) [0x7ffb3409b593]
5 /usr/local/clang/lib64/libgdal.so.36(+0xc2a97d) [0x7ffb20c2a97d]
6 /lib64/libsqlite3.so.0(+0x43499) [0x7ffb1fc96499]
7 /lib64/libsqlite3.so.0(sqlite3_step+0x3c4) [0x7ffb1fc9bae4]
8 /lib64/libsqlite3.so.0(sqlite3_exec+0xd7) [0x7ffb1fccdeb7]
9 /usr/local/clang/lib64/libgdal.so.36(+0xc2b7e2) [0x7ffb20c2b7e2]
10 /usr/local/clang/lib64/libgdal.so.36(+0xc2db3a) [0x7ffb20c2db3a]
11 /lib64/libc.so.6(+0x711d4) [0x7ffb3407f1d4]
12 /lib64/libc.so.6(+0xf3cec) [0x7ffb34101cec]
=================================
SUMMARY: processing the following file failed:
‘vector-api-overview.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.0.0
Check: installed package size
Result: NOTE
installed size is 76.1Mb
sub-directories of 1Mb or more:
doc 1.4Mb
extdata 2.0Mb
libs 71.8Mb
Flavor: r-oldrel-macos-arm64
Version: 2.1.0
Check: installed package size
Result: NOTE
installed size is 80.4Mb
sub-directories of 1Mb or more:
doc 1.4Mb
extdata 2.0Mb
libs 76.1Mb
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-x86_64