Last updated on 2024-09-18 13:51:11 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.5.4 | 224.22 | 321.57 | 545.79 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.5.4 | 186.56 | 259.09 | 445.65 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.5.4 | 1016.76 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.5.4 | 1108.99 | ERROR | |||
| r-devel-windows-x86_64 | 0.5.4 | 254.00 | 422.00 | 676.00 | ERROR | |
| r-patched-linux-x86_64 | 0.5.4 | 265.51 | 329.61 | 595.12 | ERROR | |
| r-release-linux-x86_64 | 0.5.4 | 266.81 | 332.13 | 598.94 | ERROR | |
| r-release-macos-arm64 | 0.5.4 | 247.00 | NOTE | |||
| r-release-macos-x86_64 | 0.5.4 | 376.00 | NOTE | |||
| r-release-windows-x86_64 | 0.5.4 | 266.00 | 410.00 | 676.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.5.4 | 265.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.5.4 | 509.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 0.5.4 | 322.00 | 501.00 | 823.00 | ERROR |
Version: 0.5.4
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
create_IndivCtstmTrans.Rd: R6Class
create_trans_dt.Rd: data.table
input_mats.Rd: data.table, print.data.table
partsurvfit.Rd: flexsurvreg, flexsurvspline
plot_ceac.Rd: ggplot2
plot_ceaf.Rd: ggplot2
plot_ceplane.Rd: ggplot2
plot_evpi.Rd: ggplot2
summary.eval_rng.Rd: data.table
summary.params.Rd: data.table
summary.tparams_transprobs.Rd: data.table
summary.tpmatrix.Rd: data.table
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 0.5.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [39s/43s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(hesim)
>
> test_check("hesim")
sample = 1
sample = 2
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1120 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-tpmatrix.R:232:3'): qmatrix.msm() works with factor covariates and 'newdata' is one row ──
msm::qmatrix.msm(fit, newdata[1, , drop = FALSE], ci = "none") not equal to qmatrix(fit, newdata, uncertainty = "none")[, , 1].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:242:3'): qmatrix.msm() works with factor covariates and 'newdata' is multiple rows ──
msm::qmatrix.msm(fit, newdata[2, , drop = FALSE], ci = "none") not equal to qmatrix(fit, newdata, uncertainty = "none")[, , 2].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:253:3'): qmatrix.msm() works with covariates that vary by transition ──
msm::qmatrix.msm(fit, newdata[2, , drop = FALSE], ci = "none") not equal to qmatrix(fit, newdata, uncertainty = "none")[, , 2].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:280:3'): qmatrix.msm() works with a hidden Markov model ──
msm::qmatrix.msm(fith, covariates = list(acute = 0), ci = "none") not equal to ...[].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:302:3'): qmatrix.msm() does not require 'newdata' if no covariates are included in the model. ──
msm::qmatrix.msm(fit, ci = "none") not equal to qmatrix(fit, uncertainty = "none")[, , 1].
target is msm.est, current is matrix
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1120 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.5.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [32s/38s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(hesim)
>
> test_check("hesim")
sample = 1
sample = 2
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1120 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-tpmatrix.R:232:3'): qmatrix.msm() works with factor covariates and 'newdata' is one row ──
msm::qmatrix.msm(fit, newdata[1, , drop = FALSE], ci = "none") not equal to qmatrix(fit, newdata, uncertainty = "none")[, , 1].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:242:3'): qmatrix.msm() works with factor covariates and 'newdata' is multiple rows ──
msm::qmatrix.msm(fit, newdata[2, , drop = FALSE], ci = "none") not equal to qmatrix(fit, newdata, uncertainty = "none")[, , 2].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:253:3'): qmatrix.msm() works with covariates that vary by transition ──
msm::qmatrix.msm(fit, newdata[2, , drop = FALSE], ci = "none") not equal to qmatrix(fit, newdata, uncertainty = "none")[, , 2].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:280:3'): qmatrix.msm() works with a hidden Markov model ──
msm::qmatrix.msm(fith, covariates = list(acute = 0), ci = "none") not equal to ...[].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:302:3'): qmatrix.msm() does not require 'newdata' if no covariates are included in the model. ──
msm::qmatrix.msm(fit, ci = "none") not equal to qmatrix(fit, uncertainty = "none")[, , 1].
target is msm.est, current is matrix
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1120 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.5.4
Check: installed package size
Result: NOTE
installed size is 6.2Mb
sub-directories of 1Mb or more:
doc 2.2Mb
libs 2.2Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.5.4
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘R6’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.5.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [70s/72s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(hesim)
>
> test_check("hesim")
sample = 1
sample = 2
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1120 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-tpmatrix.R:232:3'): qmatrix.msm() works with factor covariates and 'newdata' is one row ──
msm::qmatrix.msm(fit, newdata[1, , drop = FALSE], ci = "none") not equal to qmatrix(fit, newdata, uncertainty = "none")[, , 1].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:242:3'): qmatrix.msm() works with factor covariates and 'newdata' is multiple rows ──
msm::qmatrix.msm(fit, newdata[2, , drop = FALSE], ci = "none") not equal to qmatrix(fit, newdata, uncertainty = "none")[, , 2].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:253:3'): qmatrix.msm() works with covariates that vary by transition ──
msm::qmatrix.msm(fit, newdata[2, , drop = FALSE], ci = "none") not equal to qmatrix(fit, newdata, uncertainty = "none")[, , 2].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:280:3'): qmatrix.msm() works with a hidden Markov model ──
msm::qmatrix.msm(fith, covariates = list(acute = 0), ci = "none") not equal to ...[].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:302:3'): qmatrix.msm() does not require 'newdata' if no covariates are included in the model. ──
msm::qmatrix.msm(fit, ci = "none") not equal to qmatrix(fit, uncertainty = "none")[, , 1].
target is msm.est, current is matrix
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1120 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.5.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [64s/64s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(hesim)
>
> test_check("hesim")
sample = 1
sample = 2
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1120 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-tpmatrix.R:232:3'): qmatrix.msm() works with factor covariates and 'newdata' is one row ──
msm::qmatrix.msm(fit, newdata[1, , drop = FALSE], ci = "none") not equal to qmatrix(fit, newdata, uncertainty = "none")[, , 1].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:242:3'): qmatrix.msm() works with factor covariates and 'newdata' is multiple rows ──
msm::qmatrix.msm(fit, newdata[2, , drop = FALSE], ci = "none") not equal to qmatrix(fit, newdata, uncertainty = "none")[, , 2].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:253:3'): qmatrix.msm() works with covariates that vary by transition ──
msm::qmatrix.msm(fit, newdata[2, , drop = FALSE], ci = "none") not equal to qmatrix(fit, newdata, uncertainty = "none")[, , 2].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:280:3'): qmatrix.msm() works with a hidden Markov model ──
msm::qmatrix.msm(fith, covariates = list(acute = 0), ci = "none") not equal to ...[].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:302:3'): qmatrix.msm() does not require 'newdata' if no covariates are included in the model. ──
msm::qmatrix.msm(fit, ci = "none") not equal to qmatrix(fit, uncertainty = "none")[, , 1].
target is msm.est, current is matrix
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1120 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.5.4
Check: tests
Result: ERROR
Running 'testthat.R' [39s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(hesim)
>
> test_check("hesim")
sample = 1
sample = 2
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1120 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-tpmatrix.R:232:3'): qmatrix.msm() works with factor covariates and 'newdata' is one row ──
msm::qmatrix.msm(fit, newdata[1, , drop = FALSE], ci = "none") not equal to qmatrix(fit, newdata, uncertainty = "none")[, , 1].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:242:3'): qmatrix.msm() works with factor covariates and 'newdata' is multiple rows ──
msm::qmatrix.msm(fit, newdata[2, , drop = FALSE], ci = "none") not equal to qmatrix(fit, newdata, uncertainty = "none")[, , 2].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:253:3'): qmatrix.msm() works with covariates that vary by transition ──
msm::qmatrix.msm(fit, newdata[2, , drop = FALSE], ci = "none") not equal to qmatrix(fit, newdata, uncertainty = "none")[, , 2].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:280:3'): qmatrix.msm() works with a hidden Markov model ──
msm::qmatrix.msm(fith, covariates = list(acute = 0), ci = "none") not equal to ...[].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:302:3'): qmatrix.msm() does not require 'newdata' if no covariates are included in the model. ──
msm::qmatrix.msm(fit, ci = "none") not equal to qmatrix(fit, uncertainty = "none")[, , 1].
target is msm.est, current is matrix
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1120 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.5.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [40s/54s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(hesim)
>
> test_check("hesim")
sample = 1
sample = 2
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1120 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-tpmatrix.R:232:3'): qmatrix.msm() works with factor covariates and 'newdata' is one row ──
msm::qmatrix.msm(fit, newdata[1, , drop = FALSE], ci = "none") not equal to qmatrix(fit, newdata, uncertainty = "none")[, , 1].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:242:3'): qmatrix.msm() works with factor covariates and 'newdata' is multiple rows ──
msm::qmatrix.msm(fit, newdata[2, , drop = FALSE], ci = "none") not equal to qmatrix(fit, newdata, uncertainty = "none")[, , 2].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:253:3'): qmatrix.msm() works with covariates that vary by transition ──
msm::qmatrix.msm(fit, newdata[2, , drop = FALSE], ci = "none") not equal to qmatrix(fit, newdata, uncertainty = "none")[, , 2].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:280:3'): qmatrix.msm() works with a hidden Markov model ──
msm::qmatrix.msm(fith, covariates = list(acute = 0), ci = "none") not equal to ...[].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:302:3'): qmatrix.msm() does not require 'newdata' if no covariates are included in the model. ──
msm::qmatrix.msm(fit, ci = "none") not equal to qmatrix(fit, uncertainty = "none")[, , 1].
target is msm.est, current is matrix
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1120 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.5.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [41s/48s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(hesim)
>
> test_check("hesim")
sample = 1
sample = 2
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1120 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-tpmatrix.R:232:3'): qmatrix.msm() works with factor covariates and 'newdata' is one row ──
msm::qmatrix.msm(fit, newdata[1, , drop = FALSE], ci = "none") not equal to qmatrix(fit, newdata, uncertainty = "none")[, , 1].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:242:3'): qmatrix.msm() works with factor covariates and 'newdata' is multiple rows ──
msm::qmatrix.msm(fit, newdata[2, , drop = FALSE], ci = "none") not equal to qmatrix(fit, newdata, uncertainty = "none")[, , 2].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:253:3'): qmatrix.msm() works with covariates that vary by transition ──
msm::qmatrix.msm(fit, newdata[2, , drop = FALSE], ci = "none") not equal to qmatrix(fit, newdata, uncertainty = "none")[, , 2].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:280:3'): qmatrix.msm() works with a hidden Markov model ──
msm::qmatrix.msm(fith, covariates = list(acute = 0), ci = "none") not equal to ...[].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:302:3'): qmatrix.msm() does not require 'newdata' if no covariates are included in the model. ──
msm::qmatrix.msm(fit, ci = "none") not equal to qmatrix(fit, uncertainty = "none")[, , 1].
target is msm.est, current is matrix
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1120 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.5.4
Check: tests
Result: ERROR
Running 'testthat.R' [50s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(hesim)
>
> test_check("hesim")
sample = 1
sample = 2
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1120 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-tpmatrix.R:232:3'): qmatrix.msm() works with factor covariates and 'newdata' is one row ──
msm::qmatrix.msm(fit, newdata[1, , drop = FALSE], ci = "none") not equal to qmatrix(fit, newdata, uncertainty = "none")[, , 1].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:242:3'): qmatrix.msm() works with factor covariates and 'newdata' is multiple rows ──
msm::qmatrix.msm(fit, newdata[2, , drop = FALSE], ci = "none") not equal to qmatrix(fit, newdata, uncertainty = "none")[, , 2].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:253:3'): qmatrix.msm() works with covariates that vary by transition ──
msm::qmatrix.msm(fit, newdata[2, , drop = FALSE], ci = "none") not equal to qmatrix(fit, newdata, uncertainty = "none")[, , 2].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:280:3'): qmatrix.msm() works with a hidden Markov model ──
msm::qmatrix.msm(fith, covariates = list(acute = 0), ci = "none") not equal to ...[].
target is msm.est, current is matrix
── Failure ('test-tpmatrix.R:302:3'): qmatrix.msm() does not require 'newdata' if no covariates are included in the model. ──
msm::qmatrix.msm(fit, ci = "none") not equal to qmatrix(fit, uncertainty = "none")[, , 1].
target is msm.est, current is matrix
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1120 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64