CRAN Package Check Results for Package ecostats

Last updated on 2025-03-09 12:51:32 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.1 10.33 323.79 334.12 OK
r-devel-linux-x86_64-debian-gcc 1.2.1 7.52 229.67 237.19 OK
r-devel-linux-x86_64-fedora-clang 1.2.1 492.58 ERROR
r-devel-linux-x86_64-fedora-gcc 1.2.1 503.30 ERROR
r-devel-macos-arm64 1.2.1 176.00 OK
r-devel-macos-x86_64 1.2.1 532.00 OK
r-devel-windows-x86_64 1.2.1 12.00 293.00 305.00 OK
r-patched-linux-x86_64 1.2.1 11.29 306.20 317.49 OK
r-release-linux-x86_64 1.2.1 10.60 302.66 313.26 OK
r-release-macos-arm64 1.2.1 175.00 OK
r-release-macos-x86_64 1.2.1 411.00 OK
r-release-windows-x86_64 1.2.1 14.00 284.00 298.00 OK
r-oldrel-macos-arm64 1.2.1 OK
r-oldrel-macos-x86_64 1.2.1 472.00 OK
r-oldrel-windows-x86_64 1.2.1 16.00 374.00 390.00 OK

Check Details

Version: 1.2.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘Chapter10Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter10Solutions.Rmd’ --- re-building ‘Chapter11Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter11Solutions.Rmd’ --- re-building ‘Chapter12Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter12Solutions.Rmd’ --- re-building ‘Chapter13Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter13Solutions_files/figure-html/code13.3-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33249 bytes Input file size = 33375 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25542 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25542 Output IDAT size = 25542 bytes (7707 bytes decrease) Output file size = 25620 bytes (7755 bytes = 23.24% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter13Solutions_files/figure-html/code13.5-1.png 768x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35853 bytes Input file size = 35979 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27814 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27814 Output IDAT size = 27814 bytes (8039 bytes decrease) Output file size = 27892 bytes (8087 bytes = 22.48% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter13Solutions_files/figure-html/code13.6-1.png 576x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29834 bytes Input file size = 29948 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23479 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23479 Output IDAT size = 23479 bytes (6355 bytes decrease) Output file size = 23557 bytes (6391 bytes = 21.34% decrease) --- finished re-building ‘Chapter13Solutions.Rmd’ --- re-building ‘Chapter14Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter14Solutions.Rmd’ --- re-building ‘Chapter15Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter15Solutions.Rmd’ --- re-building ‘Chapter16Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter16Solutions.Rmd’ --- re-building ‘Chapter17Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/code17.1-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 56193 bytes Input file size = 56343 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45032 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45032 Output IDAT size = 45032 bytes (11161 bytes decrease) Output file size = 45110 bytes (11233 bytes = 19.94% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/code17.2-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49973 bytes Input file size = 50123 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40470 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40470 Output IDAT size = 40470 bytes (9503 bytes decrease) Output file size = 40548 bytes (9575 bytes = 19.10% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/ex17.2-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 57329 bytes Input file size = 57479 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45130 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45130 Output IDAT size = 45130 bytes (12199 bytes decrease) Output file size = 45208 bytes (12271 bytes = 21.35% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/code17.2variation-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 45767 bytes Input file size = 45905 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37024 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37024 Output IDAT size = 37024 bytes (8743 bytes decrease) Output file size = 37102 bytes (8803 bytes = 19.18% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/ex17.3cord-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 87586 bytes Input file size = 87784 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 67238 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 67238 Output IDAT size = 67238 bytes (20348 bytes decrease) Output file size = 67316 bytes (20468 bytes = 23.32% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/ex17.3X-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 83760 bytes Input file size = 83958 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 64918 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 64918 Output IDAT size = 64918 bytes (18842 bytes decrease) Output file size = 64996 bytes (18962 bytes = 22.59% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/code17.3-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 59681 bytes Input file size = 59843 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41580 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41580 Output IDAT size = 41580 bytes (18101 bytes decrease) Output file size = 41658 bytes (18185 bytes = 30.39% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/ex17.4-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 39541 bytes Input file size = 39667 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32736 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32736 Output IDAT size = 32736 bytes (6805 bytes decrease) Output file size = 32814 bytes (6853 bytes = 17.28% decrease) --- finished re-building ‘Chapter17Solutions.Rmd’ --- re-building ‘Chapter1Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/proptest graph-1.png 480x288 pixels, 8 bits/pixel, 244 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 2638 bytes Input file size = 3460 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2169 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2152 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2152 Output IDAT size = 2152 bytes (486 bytes decrease) Output file size = 2230 bytes (1230 bytes = 35.55% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/ravens plot-1.png 480x288 pixels, 8 bits/pixel, 234 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 2701 bytes Input file size = 3493 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2172 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2172 Output IDAT size = 2172 bytes (529 bytes decrease) Output file size = 2250 bytes (1243 bytes = 35.59% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/guineapigs plot-1.png 576x288 pixels, 8 bits/pixel, 242 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 2974 bytes Input file size = 3790 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2525 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2525 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2525 Output IDAT size = 2525 bytes (449 bytes decrease) Output file size = 2603 bytes (1187 bytes = 31.32% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/Code 1.2-1.png 768x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26373 bytes Input file size = 26487 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21471 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21471 Output IDAT size = 21471 bytes (4902 bytes decrease) Output file size = 21549 bytes (4938 bytes = 18.64% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/Code 1.3-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15869 bytes Input file size = 15959 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12332 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12332 Output IDAT size = 12332 bytes (3537 bytes decrease) Output file size = 12410 bytes (3549 bytes = 22.24% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/global plants-1.png 384x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6537 bytes Input file size = 7395 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5928 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5898 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5898 Output IDAT size = 5898 bytes (639 bytes decrease) Output file size = 5976 bytes (1419 bytes = 19.19% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/global plants logHt-1.png 384x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6495 bytes Input file size = 7353 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5760 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5734 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5734 Output IDAT size = 5734 bytes (761 bytes decrease) Output file size = 5812 bytes (1541 bytes = 20.96% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/seaweed plot-1.png 384x384 pixels, 8 bits/pixel, 242 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3503 bytes Input file size = 4319 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2836 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2836 Output IDAT size = 2836 bytes (667 bytes decrease) Output file size = 2914 bytes (1405 bytes = 32.53% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/seaweed transform-1.png 768x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11085 bytes Input file size = 11955 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9869 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9810 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9810 Output IDAT size = 9810 bytes (1275 bytes decrease) Output file size = 9888 bytes (2067 bytes = 17.29% decrease) --- finished re-building ‘Chapter1Solutions.Rmd’ --- re-building ‘Chapter2Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapig qqplots-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14654 bytes Input file size = 14744 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10897 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10897 Output IDAT size = 10897 bytes (3757 bytes decrease) Output file size = 10975 bytes (3769 bytes = 25.56% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapig qqplots-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14744 bytes Input file size = 14834 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10864 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10864 Output IDAT size = 10864 bytes (3880 bytes decrease) Output file size = 10942 bytes (3892 bytes = 26.24% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality scatterplot-1.png 288x288 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5049 bytes Input file size = 5904 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4487 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4464 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4464 Output IDAT size = 4464 bytes (585 bytes decrease) Output file size = 4542 bytes (1362 bytes = 23.07% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality resplots-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17502 bytes Input file size = 17604 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12625 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12625 Output IDAT size = 12625 bytes (4877 bytes decrease) Output file size = 12703 bytes (4901 bytes = 27.84% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality resplots-2.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7163 bytes Input file size = 8021 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6650 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6544 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6544 Output IDAT size = 6544 bytes (619 bytes decrease) Output file size = 6622 bytes (1399 bytes = 17.44% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality simenvelope-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14241 bytes Input file size = 14331 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10546 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10546 Output IDAT size = 10546 bytes (3695 bytes decrease) Output file size = 10624 bytes (3707 bytes = 25.87% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality simenvelope-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13362 bytes Input file size = 13452 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10028 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10028 Output IDAT size = 10028 bytes (3334 bytes decrease) Output file size = 10106 bytes (3346 bytes = 24.87% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants lm-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7361 bytes Input file size = 8219 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6792 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6733 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6733 Output IDAT size = 6733 bytes (628 bytes decrease) Output file size = 6811 bytes (1408 bytes = 17.13% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants lm-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20828 bytes Input file size = 20930 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14662 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14662 Output IDAT size = 14662 bytes (6166 bytes decrease) Output file size = 14740 bytes (6190 bytes = 29.57% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants lm-3.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14481 bytes Input file size = 14571 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10669 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10669 Output IDAT size = 10669 bytes (3812 bytes decrease) Output file size = 10747 bytes (3824 bytes = 26.24% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants loglm-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 9401 bytes Input file size = 10271 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8765 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8656 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8656 Output IDAT size = 8656 bytes (745 bytes decrease) Output file size = 8734 bytes (1537 bytes = 14.96% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants loglm-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25537 bytes Input file size = 25651 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17972 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17972 Output IDAT size = 17972 bytes (7565 bytes decrease) Output file size = 18050 bytes (7601 bytes = 29.63% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants loglm-3.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14982 bytes Input file size = 15072 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11179 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11179 Output IDAT size = 11179 bytes (3803 bytes decrease) Output file size = 11257 bytes (3815 bytes = 25.31% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapigs ttest log-transform-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12707 bytes Input file size = 12797 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9422 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9422 Output IDAT size = 9422 bytes (3285 bytes decrease) Output file size = 9500 bytes (3297 bytes = 25.76% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapigs ttest log-transform-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14227 bytes Input file size = 14317 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10572 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10572 Output IDAT size = 10572 bytes (3655 bytes decrease) Output file size = 10650 bytes (3667 bytes = 25.61% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapigs ttest log-transform slplot-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14334 bytes Input file size = 14424 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10713 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10713 Output IDAT size = 10713 bytes (3621 bytes decrease) Output file size = 10791 bytes (3633 bytes = 25.19% decrease) --- finished re-building ‘Chapter2Solutions.Rmd’ --- re-building ‘Chapter3Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter3Solutions.Rmd’ --- re-building ‘Chapter4Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter4Solutions.Rmd’ --- re-building ‘Chapter5Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter5Solutions.Rmd’ --- re-building ‘Chapter6Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter6Solutions_files/figure-html/fig6.1-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 16554 bytes Input file size = 16656 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12889 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12889 Output IDAT size = 12889 bytes (3665 bytes decrease) Output file size = 12967 bytes (3689 bytes = 22.15% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter6Solutions_files/figure-html/code62-1.png 768x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31444 bytes Input file size = 31558 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24705 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24705 Output IDAT size = 24705 bytes (6739 bytes decrease) Output file size = 24783 bytes (6775 bytes = 21.47% decrease) Quitting from lines 80-81 [code64] (Chapter6Solutions.Rmd) Error: processing vignette 'Chapter6Solutions.Rmd' failed with diagnostics: Profiling over both the residual variance and fixed effects is not numerically consistent with profiling over the fixed effects only (relative difference: 1); consider adjusting devmatchtol --- failed re-building ‘Chapter6Solutions.Rmd’ --- re-building ‘Chapter7Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter7Solutions.Rmd’ --- re-building ‘Chapter8Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box82-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24559 bytes Input file size = 24661 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17849 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17849 Output IDAT size = 17849 bytes (6710 bytes decrease) Output file size = 17927 bytes (6734 bytes = 27.31% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box82-2.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20103 bytes Input file size = 20205 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15137 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15137 Output IDAT size = 15137 bytes (4966 bytes decrease) Output file size = 15215 bytes (4990 bytes = 24.70% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box84-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 58108 bytes Input file size = 58270 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49397 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49397 Output IDAT size = 49397 bytes (8711 bytes decrease) Output file size = 49475 bytes (8795 bytes = 15.09% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box85-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35038 bytes Input file size = 35164 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24590 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24590 Output IDAT size = 24590 bytes (10448 bytes decrease) Output file size = 24668 bytes (10496 bytes = 29.85% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box85-2.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28057 bytes Input file size = 28171 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19454 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19454 Output IDAT size = 19454 bytes (8603 bytes decrease) Output file size = 19532 bytes (8639 bytes = 30.67% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box86-1.png 672x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24383 bytes Input file size = 24485 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20155 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20155 Output IDAT size = 20155 bytes (4228 bytes decrease) Output file size = 20233 bytes (4252 bytes = 17.37% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box87-1.png 672x336 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 30890 bytes Input file size = 31784 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29983 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 29385 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 28884 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 28504 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 28504 Output IDAT size = 28504 bytes (2386 bytes decrease) Output file size = 28582 bytes (3202 bytes = 10.07% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box87 sim-1.png 672x336 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 33074 bytes Input file size = 33980 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32231 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 31558 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 30951 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 30585 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 30585 Output IDAT size = 30585 bytes (2489 bytes decrease) Output file size = 30663 bytes (3317 bytes = 9.76% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box88-1.png 672x336 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 32345 bytes Input file size = 33239 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31356 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30806 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30806 Output IDAT size = 30806 bytes (1539 bytes decrease) Output file size = 30884 bytes (2355 bytes = 7.09% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box89-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13621 bytes Input file size = 13711 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10763 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10763 Output IDAT size = 10763 bytes (2858 bytes decrease) Output file size = 10841 bytes (2870 bytes = 20.93% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box89-2.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13992 bytes Input file size = 14082 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10849 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10849 Output IDAT size = 10849 bytes (3143 bytes decrease) Output file size = 10927 bytes (3155 bytes = 22.40% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/ex86-1.png 672x336 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 32203 bytes Input file size = 33097 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31273 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30739 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30739 Output IDAT size = 30739 bytes (1464 bytes decrease) Output file size = 30817 bytes (2280 bytes = 6.89% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/ex87-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12364 bytes Input file size = 12454 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9756 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9756 Output IDAT size = 9756 bytes (2608 bytes decrease) Output file size = 9834 bytes (2620 bytes = 21.04% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/ex87-2.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13512 bytes Input file size = 13602 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10603 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10603 Output IDAT size = 10603 bytes (2909 bytes decrease) Output file size = 10681 bytes (2921 bytes = 21.47% decrease) --- finished re-building ‘Chapter8Solutions.Rmd’ --- re-building ‘Chapter9Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter9Solutions.Rmd’ --- re-building ‘ecostats.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/ecostats_files/figure-html/unnamed-chunk-1-1.png 768x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 98707 bytes Input file size = 98929 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 80986 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 80986 Output IDAT size = 80986 bytes (17721 bytes decrease) Output file size = 81064 bytes (17865 bytes = 18.06% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/ecostats_files/figure-html/unnamed-chunk-2-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17028 bytes Input file size = 17130 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13030 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13030 Output IDAT size = 13030 bytes (3998 bytes decrease) Output file size = 13108 bytes (4022 bytes = 23.48% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/ecostats_files/figure-html/aphidData-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32824 bytes Input file size = 32950 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25167 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25167 Output IDAT size = 25167 bytes (7657 bytes decrease) Output file size = 25245 bytes (7705 bytes = 23.38% decrease) --- finished re-building ‘ecostats.Rmd’ SUMMARY: processing the following file failed: ‘Chapter6Solutions.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.2.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘Chapter10Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter10Solutions.Rmd’ --- re-building ‘Chapter11Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter11Solutions.Rmd’ --- re-building ‘Chapter12Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter12Solutions.Rmd’ --- re-building ‘Chapter13Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter13Solutions_files/figure-html/code13.3-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33249 bytes Input file size = 33375 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25542 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25542 Output IDAT size = 25542 bytes (7707 bytes decrease) Output file size = 25620 bytes (7755 bytes = 23.24% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter13Solutions_files/figure-html/code13.5-1.png 768x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35853 bytes Input file size = 35979 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27814 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27814 Output IDAT size = 27814 bytes (8039 bytes decrease) Output file size = 27892 bytes (8087 bytes = 22.48% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter13Solutions_files/figure-html/code13.6-1.png 576x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29834 bytes Input file size = 29948 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23479 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23479 Output IDAT size = 23479 bytes (6355 bytes decrease) Output file size = 23557 bytes (6391 bytes = 21.34% decrease) --- finished re-building ‘Chapter13Solutions.Rmd’ --- re-building ‘Chapter14Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter14Solutions.Rmd’ --- re-building ‘Chapter15Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter15Solutions.Rmd’ --- re-building ‘Chapter16Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter16Solutions.Rmd’ --- re-building ‘Chapter17Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/code17.1-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 55669 bytes Input file size = 55819 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44393 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44393 Output IDAT size = 44393 bytes (11276 bytes decrease) Output file size = 44471 bytes (11348 bytes = 20.33% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/code17.2-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49681 bytes Input file size = 49831 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40486 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40486 Output IDAT size = 40486 bytes (9195 bytes decrease) Output file size = 40564 bytes (9267 bytes = 18.60% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/ex17.2-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 56352 bytes Input file size = 56502 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44712 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44712 Output IDAT size = 44712 bytes (11640 bytes decrease) Output file size = 44790 bytes (11712 bytes = 20.73% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/code17.2variation-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 46695 bytes Input file size = 46833 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37646 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37646 Output IDAT size = 37646 bytes (9049 bytes decrease) Output file size = 37724 bytes (9109 bytes = 19.45% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/ex17.3cord-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 87060 bytes Input file size = 87258 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 66885 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 66885 Output IDAT size = 66885 bytes (20175 bytes decrease) Output file size = 66963 bytes (20295 bytes = 23.26% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/ex17.3X-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 84564 bytes Input file size = 84762 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 65372 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 65372 Output IDAT size = 65372 bytes (19192 bytes decrease) Output file size = 65450 bytes (19312 bytes = 22.78% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/code17.3-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 65143 bytes Input file size = 65305 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43845 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43845 Output IDAT size = 43845 bytes (21298 bytes decrease) Output file size = 43923 bytes (21382 bytes = 32.74% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/ex17.4-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 39552 bytes Input file size = 39678 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32771 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32771 Output IDAT size = 32771 bytes (6781 bytes decrease) Output file size = 32849 bytes (6829 bytes = 17.21% decrease) --- finished re-building ‘Chapter17Solutions.Rmd’ --- re-building ‘Chapter1Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/proptest graph-1.png 480x288 pixels, 8 bits/pixel, 244 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 2638 bytes Input file size = 3460 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2169 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2152 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2152 Output IDAT size = 2152 bytes (486 bytes decrease) Output file size = 2230 bytes (1230 bytes = 35.55% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/ravens plot-1.png 480x288 pixels, 8 bits/pixel, 234 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 2701 bytes Input file size = 3493 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2172 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2172 Output IDAT size = 2172 bytes (529 bytes decrease) Output file size = 2250 bytes (1243 bytes = 35.59% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/guineapigs plot-1.png 576x288 pixels, 8 bits/pixel, 242 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 2974 bytes Input file size = 3790 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2525 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2525 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2525 Output IDAT size = 2525 bytes (449 bytes decrease) Output file size = 2603 bytes (1187 bytes = 31.32% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/Code 1.2-1.png 768x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26330 bytes Input file size = 26444 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21455 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21455 Output IDAT size = 21455 bytes (4875 bytes decrease) Output file size = 21533 bytes (4911 bytes = 18.57% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/Code 1.3-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15878 bytes Input file size = 15968 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12334 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12334 Output IDAT size = 12334 bytes (3544 bytes decrease) Output file size = 12412 bytes (3556 bytes = 22.27% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/global plants-1.png 384x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6537 bytes Input file size = 7395 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5928 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5898 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5898 Output IDAT size = 5898 bytes (639 bytes decrease) Output file size = 5976 bytes (1419 bytes = 19.19% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/global plants logHt-1.png 384x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6495 bytes Input file size = 7353 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5760 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5734 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5734 Output IDAT size = 5734 bytes (761 bytes decrease) Output file size = 5812 bytes (1541 bytes = 20.96% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/seaweed plot-1.png 384x384 pixels, 8 bits/pixel, 242 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3503 bytes Input file size = 4319 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2836 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2836 Output IDAT size = 2836 bytes (667 bytes decrease) Output file size = 2914 bytes (1405 bytes = 32.53% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/seaweed transform-1.png 768x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11085 bytes Input file size = 11955 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9869 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9810 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9810 Output IDAT size = 9810 bytes (1275 bytes decrease) Output file size = 9888 bytes (2067 bytes = 17.29% decrease) --- finished re-building ‘Chapter1Solutions.Rmd’ --- re-building ‘Chapter2Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapig qqplots-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14652 bytes Input file size = 14742 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10902 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10902 Output IDAT size = 10902 bytes (3750 bytes decrease) Output file size = 10980 bytes (3762 bytes = 25.52% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapig qqplots-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14762 bytes Input file size = 14852 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10880 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10880 Output IDAT size = 10880 bytes (3882 bytes decrease) Output file size = 10958 bytes (3894 bytes = 26.22% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality scatterplot-1.png 288x288 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5049 bytes Input file size = 5904 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4487 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4464 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4464 Output IDAT size = 4464 bytes (585 bytes decrease) Output file size = 4542 bytes (1362 bytes = 23.07% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality resplots-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17502 bytes Input file size = 17604 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12625 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12625 Output IDAT size = 12625 bytes (4877 bytes decrease) Output file size = 12703 bytes (4901 bytes = 27.84% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality resplots-2.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7163 bytes Input file size = 8021 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6650 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6544 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6544 Output IDAT size = 6544 bytes (619 bytes decrease) Output file size = 6622 bytes (1399 bytes = 17.44% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality simenvelope-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14260 bytes Input file size = 14350 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10557 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10557 Output IDAT size = 10557 bytes (3703 bytes decrease) Output file size = 10635 bytes (3715 bytes = 25.89% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality simenvelope-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13365 bytes Input file size = 13455 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10031 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10031 Output IDAT size = 10031 bytes (3334 bytes decrease) Output file size = 10109 bytes (3346 bytes = 24.87% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants lm-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7361 bytes Input file size = 8219 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6792 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6733 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6733 Output IDAT size = 6733 bytes (628 bytes decrease) Output file size = 6811 bytes (1408 bytes = 17.13% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants lm-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20376 bytes Input file size = 20478 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14396 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14396 Output IDAT size = 14396 bytes (5980 bytes decrease) Output file size = 14474 bytes (6004 bytes = 29.32% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants lm-3.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14458 bytes Input file size = 14548 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10671 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10671 Output IDAT size = 10671 bytes (3787 bytes decrease) Output file size = 10749 bytes (3799 bytes = 26.11% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants loglm-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 9401 bytes Input file size = 10271 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8765 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8656 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8656 Output IDAT size = 8656 bytes (745 bytes decrease) Output file size = 8734 bytes (1537 bytes = 14.96% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants loglm-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24953 bytes Input file size = 25067 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17599 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17599 Output IDAT size = 17599 bytes (7354 bytes decrease) Output file size = 17677 bytes (7390 bytes = 29.48% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants loglm-3.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15005 bytes Input file size = 15095 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11193 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11193 Output IDAT size = 11193 bytes (3812 bytes decrease) Output file size = 11271 bytes (3824 bytes = 25.33% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapigs ttest log-transform-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12707 bytes Input file size = 12797 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9422 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9422 Output IDAT size = 9422 bytes (3285 bytes decrease) Output file size = 9500 bytes (3297 bytes = 25.76% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapigs ttest log-transform-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14222 bytes Input file size = 14312 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10572 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10572 Output IDAT size = 10572 bytes (3650 bytes decrease) Output file size = 10650 bytes (3662 bytes = 25.59% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapigs ttest log-transform slplot-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14354 bytes Input file size = 14444 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10708 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10708 Output IDAT size = 10708 bytes (3646 bytes decrease) Output file size = 10786 bytes (3658 bytes = 25.33% decrease) --- finished re-building ‘Chapter2Solutions.Rmd’ --- re-building ‘Chapter3Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter3Solutions.Rmd’ --- re-building ‘Chapter4Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter4Solutions.Rmd’ --- re-building ‘Chapter5Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter5Solutions.Rmd’ --- re-building ‘Chapter6Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter6Solutions_files/figure-html/fig6.1-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 16554 bytes Input file size = 16656 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12889 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12889 Output IDAT size = 12889 bytes (3665 bytes decrease) Output file size = 12967 bytes (3689 bytes = 22.15% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter6Solutions_files/figure-html/code62-1.png 768x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31444 bytes Input file size = 31558 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24705 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24705 Output IDAT size = 24705 bytes (6739 bytes decrease) Output file size = 24783 bytes (6775 bytes = 21.47% decrease) Quitting from lines 80-81 [code64] (Chapter6Solutions.Rmd) Error: processing vignette 'Chapter6Solutions.Rmd' failed with diagnostics: Profiling over both the residual variance and fixed effects is not numerically consistent with profiling over the fixed effects only (relative difference: 1); consider adjusting devmatchtol --- failed re-building ‘Chapter6Solutions.Rmd’ --- re-building ‘Chapter7Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter7Solutions.Rmd’ --- re-building ‘Chapter8Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box82-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24559 bytes Input file size = 24661 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17849 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17849 Output IDAT size = 17849 bytes (6710 bytes decrease) Output file size = 17927 bytes (6734 bytes = 27.31% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box82-2.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20067 bytes Input file size = 20169 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15139 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15139 Output IDAT size = 15139 bytes (4928 bytes decrease) Output file size = 15217 bytes (4952 bytes = 24.55% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box84-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 58111 bytes Input file size = 58273 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49399 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49399 Output IDAT size = 49399 bytes (8712 bytes decrease) Output file size = 49477 bytes (8796 bytes = 15.09% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box85-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35038 bytes Input file size = 35164 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24590 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24590 Output IDAT size = 24590 bytes (10448 bytes decrease) Output file size = 24668 bytes (10496 bytes = 29.85% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box85-2.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28121 bytes Input file size = 28235 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19463 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19463 Output IDAT size = 19463 bytes (8658 bytes decrease) Output file size = 19541 bytes (8694 bytes = 30.79% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box86-1.png 672x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24383 bytes Input file size = 24485 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20155 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20155 Output IDAT size = 20155 bytes (4228 bytes decrease) Output file size = 20233 bytes (4252 bytes = 17.37% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box87-1.png 672x336 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 30890 bytes Input file size = 31784 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29983 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 29385 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 28884 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 28504 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 28504 Output IDAT size = 28504 bytes (2386 bytes decrease) Output file size = 28582 bytes (3202 bytes = 10.07% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box87 sim-1.png 672x336 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 37168 bytes Input file size = 38074 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36439 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 35415 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 34084 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 33498 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 33498 Output IDAT size = 33498 bytes (3670 bytes decrease) Output file size = 33576 bytes (4498 bytes = 11.81% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box88-1.png 672x336 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 32345 bytes Input file size = 33239 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31356 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30806 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30806 Output IDAT size = 30806 bytes (1539 bytes decrease) Output file size = 30884 bytes (2355 bytes = 7.09% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box89-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13625 bytes Input file size = 13715 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10768 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10768 Output IDAT size = 10768 bytes (2857 bytes decrease) Output file size = 10846 bytes (2869 bytes = 20.92% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box89-2.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13992 bytes Input file size = 14082 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10849 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10849 Output IDAT size = 10849 bytes (3143 bytes decrease) Output file size = 10927 bytes (3155 bytes = 22.40% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/ex86-1.png 672x336 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 32203 bytes Input file size = 33097 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31273 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30739 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30739 Output IDAT size = 30739 bytes (1464 bytes decrease) Output file size = 30817 bytes (2280 bytes = 6.89% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/ex87-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12364 bytes Input file size = 12454 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9756 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9756 Output IDAT size = 9756 bytes (2608 bytes decrease) Output file size = 9834 bytes (2620 bytes = 21.04% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/ex87-2.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13512 bytes Input file size = 13602 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10603 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10603 Output IDAT size = 10603 bytes (2909 bytes decrease) Output file size = 10681 bytes (2921 bytes = 21.47% decrease) --- finished re-building ‘Chapter8Solutions.Rmd’ --- re-building ‘Chapter9Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter9Solutions.Rmd’ --- re-building ‘ecostats.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/ecostats_files/figure-html/unnamed-chunk-1-1.png 768x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 98776 bytes Input file size = 98998 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 81022 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 81022 Output IDAT size = 81022 bytes (17754 bytes decrease) Output file size = 81100 bytes (17898 bytes = 18.08% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/ecostats_files/figure-html/unnamed-chunk-2-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17264 bytes Input file size = 17366 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13159 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13159 Output IDAT size = 13159 bytes (4105 bytes decrease) Output file size = 13237 bytes (4129 bytes = 23.78% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/ecostats_files/figure-html/aphidData-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32824 bytes Input file size = 32950 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25167 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25167 Output IDAT size = 25167 bytes (7657 bytes decrease) Output file size = 25245 bytes (7705 bytes = 23.38% decrease) --- finished re-building ‘ecostats.Rmd’ SUMMARY: processing the following file failed: ‘Chapter6Solutions.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc