CRAN Package Check Results for Package ICAMS

Last updated on 2025-04-16 12:49:34 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.3.12 52.00 818.27 870.27 NOTE
r-devel-linux-x86_64-debian-gcc 2.3.12 39.23 528.30 567.53 NOTE
r-devel-linux-x86_64-fedora-clang 2.3.12 1244.71 OK
r-devel-linux-x86_64-fedora-gcc 2.3.12 1123.18 OK
r-devel-windows-x86_64 2.3.12 55.00 576.00 631.00 NOTE
r-patched-linux-x86_64 2.3.12 53.49 676.62 730.11 NOTE
r-release-linux-x86_64 2.3.12 51.02 672.98 724.00 NOTE
r-release-macos-arm64 2.3.12 247.00 OK
r-release-macos-x86_64 2.3.12 356.00 OK
r-release-windows-x86_64 2.3.12 55.00 570.00 625.00 NOTE
r-oldrel-macos-arm64 2.3.12 181.00 NOTE
r-oldrel-macos-x86_64 2.3.12 286.00 NOTE
r-oldrel-windows-x86_64 2.3.12 73.00 770.00 843.00 OK

Check Details

Version: 2.3.12
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: AnnotateDBSVCF.Rd: BSgenome AnnotateSBSVCF.Rd: BSgenome GeneExpressionData.Rd: data.table ICAMS.Rd: BSgenome MutectVCFFilesToCatalog.Rd: BSgenome MutectVCFFilesToCatalogAndPlotToPdf.Rd: BSgenome MutectVCFFilesToZipFile.Rd: BSgenome NormalizeGenomeArg.Rd: BSgenome PlotTransBiasGeneExp.Rd: data.table PlotTransBiasGeneExpToPdf.Rd: data.table StrelkaSBSVCFFilesToCatalog.Rd: BSgenome StrelkaSBSVCFFilesToCatalogAndPlotToPdf.Rd: BSgenome StrelkaSBSVCFFilesToZipFile.Rd: BSgenome VCFsToCatalogs.Rd: BSgenome VCFsToCatalogsAndPlotToPdf.Rd: BSgenome VCFsToDBSCatalogs.Rd: BSgenome VCFsToSBSCatalogs.Rd: BSgenome VCFsToZipFile.Rd: BSgenome revc.Rd: reverseComplement Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Version: 2.3.12
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'BSgenome.Hsapiens.1000genomes.hs37d5', 'BSgenome.Hsapiens.UCSC.hg38', 'BSgenome.Mmusculus.UCSC.mm10' Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64