CRAN Package Check Results for Package FMM

Last updated on 2025-04-14 11:50:06 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	0.4.0	4.08	118.08	122.16	OK
r-devel-linux-x86_64-debian-gcc	0.4.0	3.11	30.54	33.65	ERROR
r-devel-linux-x86_64-fedora-gcc	0.4.0			202.08	OK
r-devel-windows-x86_64	0.4.0	5.00	141.00	146.00	OK
r-patched-linux-x86_64	0.4.0	4.72	115.96	120.68	OK
r-release-linux-x86_64	0.4.0	3.87	39.46	43.33	ERROR
r-release-macos-arm64	0.4.0			78.00	OK
r-release-macos-x86_64	0.4.0			111.00	OK
r-release-windows-x86_64	0.4.0	7.00	72.00	79.00	ERROR
r-oldrel-macos-arm64	0.4.0			69.00	OK
r-oldrel-macos-x86_64	0.4.0			167.00	OK
r-oldrel-windows-x86_64	0.4.0	7.00	72.00	79.00	ERROR

Check Details

Version: 0.4.0
Check: examples
Result: ERROR Running examples in ‘FMM-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: FMM-methods > ### Title: Methods for objects of class "FMM" > ### Aliases: FMM-methods summary coef fitted resid summary,FMM-method > ### coef,FMM-method fitted,FMM-method resid,FMM-method > > ### ** Examples > > ## Generate example data: > fmm2.data <- generateFMM(0, rep(2, 2), c(1.5, 3.4), c(0.2, 2.3), c(0.1, 0.2), + plot = FALSE, outvalues = TRUE, + sigmaNoise = 0.5) # add a gaussian noise with sigma = 0.5 > > ## Fit the FMM model with nback = 2 component > ## fit is an object of S4 class 'FMM' > fit <- fitFMM(vData = fmm2.data$y,timePoints = fmm2.data$t,nback = 2, + lengthAlphaGrid = 24,lengthOmegaGrid = 10) Error in `rlang::env_unlock()`: ! `env_unlock()` is defunct as of rlang 1.1.5 Backtrace: ▆ 1. └─FMM::fitFMM(...) 2. └─FMM:::addShowMethod() 3. └─rlang::env_unlock(env = asNamespace("FMM")) 4. └─rlang::abort(msg) Execution halted Flavors: r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64

Version: 0.4.0
Check: tests
Result: ERROR Running ‘testthat.R’ [2s/3s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(FMM) > > test_check("FMM") [ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_fitFMM.R:4:3'): Parameter values in correct range. ───────────── Error in `rlang::env_unlock(env = asNamespace("FMM"))`: `env_unlock()` is defunct as of rlang 1.1.5 Backtrace: ▆ 1. └─FMM::fitFMM(mouseGeneExp, nback = 2) at test_fitFMM.R:4:3 2. └─FMM:::addShowMethod() 3. └─rlang::env_unlock(env = asNamespace("FMM")) 4. └─rlang::abort(msg) ── Error ('test_fitFMM.R:22:3'): Returns an S4 class object (FMM object). ────── Error in `rlang::env_unlock(env = asNamespace("FMM"))`: `env_unlock()` is defunct as of rlang 1.1.5 Backtrace: ▆ 1. ├─testthat::expect_s4_class(fitFMM(mouseGeneExp, nback = 2), "FMM") at test_fitFMM.R:22:3 2. │ └─testthat::quasi_label(enquo(object), arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─FMM::fitFMM(mouseGeneExp, nback = 2) 5. └─FMM:::addShowMethod() 6. └─rlang::env_unlock(env = asNamespace("FMM")) 7. └─rlang::abort(msg) ── Error ('test_fitFMM.R:28:3'): Correct length of each vector slot. ─────────── Error in `rlang::env_unlock(env = asNamespace("FMM"))`: `env_unlock()` is defunct as of rlang 1.1.5 Backtrace: ▆ 1. └─FMM::fitFMM(mouseGeneExp, nback = 2) at test_fitFMM.R:28:3 2. └─FMM:::addShowMethod() 3. └─rlang::env_unlock(env = asNamespace("FMM")) 4. └─rlang::abort(msg) ── Error ('test_fitFMM.R:60:3'): FMM fit in limit parameter values simulated data. ── Error in `rlang::env_unlock(env = asNamespace("FMM"))`: `env_unlock()` is defunct as of rlang 1.1.5 Backtrace: ▆ 1. └─FMM::fitFMM(tmpData, nback = 2) at test_fitFMM.R:60:3 2. └─FMM:::addShowMethod() 3. └─rlang::env_unlock(env = asNamespace("FMM")) 4. └─rlang::abort(msg) [ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ] Error: Test failures Execution halted Flavors: r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64

Version: 0.4.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘FMMVignette.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/FMM.Rcheck/vign_test/FMM/vignettes/FMMVignette_files/figure-html/unnamed-chunk-4-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 48238 bytes Input file size = 48376 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40542 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40542 Output IDAT size = 40542 bytes (7696 bytes decrease) Output file size = 40620 bytes (7756 bytes = 16.03% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/FMM.Rcheck/vign_test/FMM/vignettes/FMMVignette_files/figure-html/unnamed-chunk-6-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 110649 bytes Input file size = 110883 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 77789 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 77789 Output IDAT size = 77789 bytes (32860 bytes decrease) Output file size = 77867 bytes (33016 bytes = 29.78% decrease) Quitting from FMMVignette.Rmd:216-219 [unnamed-chunk-7] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'FMMVignette.Rmd' failed with diagnostics: `env_unlock()` is defunct as of rlang 1.1.5 --- failed re-building ‘FMMVignette.Rmd’ SUMMARY: processing the following file failed: ‘FMMVignette.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.4.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘FMMVignette.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/FMM.Rcheck/vign_test/FMM/vignettes/FMMVignette_files/figure-html/unnamed-chunk-4-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 48238 bytes Input file size = 48376 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40542 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40542 Output IDAT size = 40542 bytes (7696 bytes decrease) Output file size = 40620 bytes (7756 bytes = 16.03% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/FMM.Rcheck/vign_test/FMM/vignettes/FMMVignette_files/figure-html/unnamed-chunk-6-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 110649 bytes Input file size = 110883 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 77789 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 77789 Output IDAT size = 77789 bytes (32860 bytes decrease) Output file size = 77867 bytes (33016 bytes = 29.78% decrease) Quitting from FMMVignette.Rmd:216-219 [unnamed-chunk-7] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'FMMVignette.Rmd' failed with diagnostics: `env_unlock()` is defunct as of rlang 1.1.5 --- failed re-building ‘FMMVignette.Rmd’ SUMMARY: processing the following file failed: ‘FMMVignette.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-linux-x86_64

Version: 0.4.0
Check: examples
Result: ERROR Running examples in 'FMM-Ex.R' failed The error most likely occurred in: > ### Name: FMM-methods > ### Title: Methods for objects of class "FMM" > ### Aliases: FMM-methods summary coef fitted resid summary,FMM-method > ### coef,FMM-method fitted,FMM-method resid,FMM-method > > ### ** Examples > > ## Generate example data: > fmm2.data <- generateFMM(0, rep(2, 2), c(1.5, 3.4), c(0.2, 2.3), c(0.1, 0.2), + plot = FALSE, outvalues = TRUE, + sigmaNoise = 0.5) # add a gaussian noise with sigma = 0.5 > > ## Fit the FMM model with nback = 2 component > ## fit is an object of S4 class 'FMM' > fit <- fitFMM(vData = fmm2.data$y,timePoints = fmm2.data$t,nback = 2, + lengthAlphaGrid = 24,lengthOmegaGrid = 10) Error in `rlang::env_unlock()`: ! `env_unlock()` is defunct as of rlang 1.1.5 Backtrace: ▆ 1. └─FMM::fitFMM(...) 2. └─FMM:::addShowMethod() 3. └─rlang::env_unlock(env = asNamespace("FMM")) 4. └─rlang::abort(msg) Execution halted Flavors: r-release-windows-x86_64, r-oldrel-windows-x86_64

Version: 0.4.0
Check: tests
Result: ERROR Running 'testthat.R' [4s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(FMM) > > test_check("FMM") [ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_fitFMM.R:4:3'): Parameter values in correct range. ───────────── Error in `rlang::env_unlock(env = asNamespace("FMM"))`: `env_unlock()` is defunct as of rlang 1.1.5 Backtrace: ▆ 1. └─FMM::fitFMM(mouseGeneExp, nback = 2) at test_fitFMM.R:4:3 2. └─FMM:::addShowMethod() 3. └─rlang::env_unlock(env = asNamespace("FMM")) 4. └─rlang::abort(msg) ── Error ('test_fitFMM.R:22:3'): Returns an S4 class object (FMM object). ────── Error in `rlang::env_unlock(env = asNamespace("FMM"))`: `env_unlock()` is defunct as of rlang 1.1.5 Backtrace: ▆ 1. ├─testthat::expect_s4_class(fitFMM(mouseGeneExp, nback = 2), "FMM") at test_fitFMM.R:22:3 2. │ └─testthat::quasi_label(enquo(object), arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─FMM::fitFMM(mouseGeneExp, nback = 2) 5. └─FMM:::addShowMethod() 6. └─rlang::env_unlock(env = asNamespace("FMM")) 7. └─rlang::abort(msg) ── Error ('test_fitFMM.R:28:3'): Correct length of each vector slot. ─────────── Error in `rlang::env_unlock(env = asNamespace("FMM"))`: `env_unlock()` is defunct as of rlang 1.1.5 Backtrace: ▆ 1. └─FMM::fitFMM(mouseGeneExp, nback = 2) at test_fitFMM.R:28:3 2. └─FMM:::addShowMethod() 3. └─rlang::env_unlock(env = asNamespace("FMM")) 4. └─rlang::abort(msg) ── Error ('test_fitFMM.R:60:3'): FMM fit in limit parameter values simulated data. ── Error in `rlang::env_unlock(env = asNamespace("FMM"))`: `env_unlock()` is defunct as of rlang 1.1.5 Backtrace: ▆ 1. └─FMM::fitFMM(tmpData, nback = 2) at test_fitFMM.R:60:3 2. └─FMM:::addShowMethod() 3. └─rlang::env_unlock(env = asNamespace("FMM")) 4. └─rlang::abort(msg) [ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ] Error: Test failures Execution halted Flavors: r-release-windows-x86_64, r-oldrel-windows-x86_64

Version: 0.4.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'FMMVignette.Rmd' using rmarkdown Quitting from FMMVignette.Rmd:216-219 [unnamed-chunk-7] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'FMMVignette.Rmd' failed with diagnostics: `env_unlock()` is defunct as of rlang 1.1.5 --- failed re-building 'FMMVignette.Rmd' SUMMARY: processing the following file failed: 'FMMVignette.Rmd' Error: Vignette re-building failed. Execution halted Flavors: r-release-windows-x86_64, r-oldrel-windows-x86_64