Last updated on 2025-07-11 11:49:15 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.4.0 | 95.03 | 1101.68 | 1196.71 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.4.0 | 63.85 | 564.87 | 628.72 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.4.0 | 1551.49 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.4.0 | 1325.06 | ERROR | |||
| r-devel-windows-x86_64 | 0.4.0 | 85.00 | 663.00 | 748.00 | OK | |
| r-patched-linux-x86_64 | 0.4.0 | 84.69 | 778.24 | 862.93 | ERROR | |
| r-release-linux-x86_64 | 0.4.0 | 81.11 | 795.47 | 876.58 | OK | |
| r-release-macos-arm64 | 0.4.0 | 394.00 | OK | |||
| r-release-macos-x86_64 | 0.4.0 | 530.00 | OK | |||
| r-release-windows-x86_64 | 0.4.0 | 87.00 | 655.00 | 742.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.4.0 | 308.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.4.0 | 581.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 0.4.0 | 112.00 | 944.00 | 1056.00 | OK |
Version: 0.4.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Using-FLORAL-for-Microbiome-Analysis.Rmd’ using rmarkdown
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--- finished re-building ‘Using-FLORAL-for-Microbiome-Analysis.Rmd’
--- re-building ‘Using-FLORAL-for-survival-models-with-longitudinal-microbiome-data.Rmd’ using rmarkdown
--- finished re-building ‘Using-FLORAL-for-survival-models-with-longitudinal-microbiome-data.Rmd’
--- re-building ‘Using-FLORAL-with-phyloseq.Rmd’ using rmarkdown
Quitting from Using-FLORAL-with-phyloseq.Rmd:25-41 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `file()`:
! cannot open the connection to 'https://figshare.com/ndownloader/files/33076496'
---
Backtrace:
▆
1. ├─... %>% distinct()
2. ├─dplyr::distinct(.)
3. ├─dplyr::select(., -Pool, -Run, -ShotgunBatchID)
4. ├─dplyr::distinct(.)
5. └─utils::read.csv("https://figshare.com/ndownloader/files/33076496")
6. └─utils::read.table(...)
7. └─base::file(file, "rt")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Using-FLORAL-with-phyloseq.Rmd' failed with diagnostics:
cannot open the connection to 'https://figshare.com/ndownloader/files/33076496'
--- failed re-building ‘Using-FLORAL-with-phyloseq.Rmd’
SUMMARY: processing the following file failed:
‘Using-FLORAL-with-phyloseq.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64
Version: 0.4.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Using-FLORAL-for-Microbiome-Analysis.Rmd’ using rmarkdown
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[----|----|----|----|----|----|----|----|----|----|
OMP: Warning #96: Cannot form a team with 8 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
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--- finished re-building ‘Using-FLORAL-for-Microbiome-Analysis.Rmd’
--- re-building ‘Using-FLORAL-for-survival-models-with-longitudinal-microbiome-data.Rmd’ using rmarkdown
OMP: Warning #96: Cannot form a team with 8 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
--- finished re-building ‘Using-FLORAL-for-survival-models-with-longitudinal-microbiome-data.Rmd’
--- re-building ‘Using-FLORAL-with-phyloseq.Rmd’ using rmarkdown
Quitting from Using-FLORAL-with-phyloseq.Rmd:25-41 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `file()`:
! cannot open the connection to 'https://figshare.com/ndownloader/files/33076496'
---
Backtrace:
▆
1. ├─... %>% distinct()
2. ├─dplyr::distinct(.)
3. ├─dplyr::select(., -Pool, -Run, -ShotgunBatchID)
4. ├─dplyr::distinct(.)
5. └─utils::read.csv("https://figshare.com/ndownloader/files/33076496")
6. └─utils::read.table(...)
7. └─base::file(file, "rt")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Using-FLORAL-with-phyloseq.Rmd' failed with diagnostics:
cannot open the connection to 'https://figshare.com/ndownloader/files/33076496'
--- failed re-building ‘Using-FLORAL-with-phyloseq.Rmd’
SUMMARY: processing the following file failed:
‘Using-FLORAL-with-phyloseq.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.4.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Using-FLORAL-for-Microbiome-Analysis.Rmd’ using rmarkdown
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
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[----|----|----|----|----|----|----|----|----|----|
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--- finished re-building ‘Using-FLORAL-for-Microbiome-Analysis.Rmd’
--- re-building ‘Using-FLORAL-for-survival-models-with-longitudinal-microbiome-data.Rmd’ using rmarkdown
--- finished re-building ‘Using-FLORAL-for-survival-models-with-longitudinal-microbiome-data.Rmd’
--- re-building ‘Using-FLORAL-with-phyloseq.Rmd’ using rmarkdown
Quitting from Using-FLORAL-with-phyloseq.Rmd:25-41 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `file()`:
! cannot open the connection to 'https://figshare.com/ndownloader/files/33076496'
---
Backtrace:
▆
1. ├─... %>% distinct()
2. ├─dplyr::distinct(.)
3. ├─dplyr::select(., -Pool, -Run, -ShotgunBatchID)
4. ├─dplyr::distinct(.)
5. └─utils::read.csv("https://figshare.com/ndownloader/files/33076496")
6. └─utils::read.table(...)
7. └─base::file(file, "rt")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Using-FLORAL-with-phyloseq.Rmd' failed with diagnostics:
cannot open the connection to 'https://figshare.com/ndownloader/files/33076496'
--- failed re-building ‘Using-FLORAL-with-phyloseq.Rmd’
SUMMARY: processing the following file failed:
‘Using-FLORAL-with-phyloseq.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-gcc, r-release-windows-x86_64
Version: 0.4.0
Check: installed package size
Result: NOTE
installed size is 8.3Mb
sub-directories of 1Mb or more:
doc 1.2Mb
libs 6.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64