CRAN Package Check Results for Package CooccurrenceAffinity

Last updated on 2025-06-27 12:07:26 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 5.66 63.08 68.74 ERROR
r-devel-linux-x86_64-debian-gcc 1.0 4.53 42.96 47.49 ERROR
r-devel-linux-x86_64-fedora-clang 1.0.2 87.48 OK
r-devel-linux-x86_64-fedora-gcc 1.0 104.47 ERROR
r-devel-windows-x86_64 1.0 8.00 81.00 89.00 NOTE
r-patched-linux-x86_64 ERROR
r-release-linux-x86_64 1.0 5.77 57.84 63.61 ERROR
r-release-macos-arm64 1.0 34.00 NOTE
r-release-macos-x86_64 1.0.2 56.00 OK
r-release-windows-x86_64 1.0 9.00 80.00 89.00 NOTE
r-oldrel-macos-arm64 1.0 29.00 NOTE
r-oldrel-macos-x86_64 1.0.2 54.00 OK
r-oldrel-windows-x86_64 1.0 12.00 93.00 105.00 NOTE

Additional issues

noSuggests

Check Details

Version: 1.0
Check: Rd files
Result: NOTE checkRd: (-1) CovrgPlot.Rd:28: Lost braces; missing escapes or markup? 28 | \item{plotCI}{a vector of up to 4 numbers out of the set {1,2,3,4}, corresponding to which | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-windows-x86_64

Version: 1.0
Check: examples
Result: ERROR Running examples in ‘CooccurrenceAffinity-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: affinity > ### Title: Computes alpha, probability, expected co-occurence, median > ### interval, various confidence intervals, other indices of affinity, > ### etc. > ### Aliases: affinity > > ### ** Examples > > # when you have a binary presence absence occurrence data > # ------------------------------------------------------- > > if(requireNamespace("cooccur", quietly = TRUE)) { + data(finches, package = "cooccur") + } else { + message("The cooccur package is not installed. + You can install it with install.packages('cooccur').") + } The cooccur package is not installed. You can install it with install.packages('cooccur'). > > data(finches, package = "cooccur") Error in find.package(package, lib.loc, verbose = verbose) : there is no package called ‘cooccur’ Calls: data -> find.package Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed CovrgPlot 4.534 0.054 5.216 Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.0
Check: examples
Result: ERROR Running examples in ‘CooccurrenceAffinity-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: affinity > ### Title: Computes alpha, probability, expected co-occurence, median > ### interval, various confidence intervals, other indices of affinity, > ### etc. > ### Aliases: affinity > > ### ** Examples > > # when you have a binary presence absence occurrence data > # ------------------------------------------------------- > > if(requireNamespace("cooccur", quietly = TRUE)) { + data(finches, package = "cooccur") + } else { + message("The cooccur package is not installed. + You can install it with install.packages('cooccur').") + } The cooccur package is not installed. You can install it with install.packages('cooccur'). > > data(finches, package = "cooccur") Error in find.package(package, lib.loc, verbose = verbose) : there is no package called ‘cooccur’ Calls: data -> find.package Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0
Check: examples
Result: ERROR Running examples in ‘CooccurrenceAffinity-Ex.R’ failed The error most likely occurred in: > ### Name: affinity > ### Title: Computes alpha, probability, expected co-occurence, median > ### interval, various confidence intervals, other indices of affinity, > ### etc. > ### Aliases: affinity > > ### ** Examples > > # when you have a binary presence absence occurrence data > # ------------------------------------------------------- > > if(requireNamespace("cooccur", quietly = TRUE)) { + data(finches, package = "cooccur") + } else { + message("The cooccur package is not installed. + You can install it with install.packages('cooccur').") + } The cooccur package is not installed. You can install it with install.packages('cooccur'). > > data(finches, package = "cooccur") Error in find.package(package, lib.loc, verbose = verbose) : there is no package called ‘cooccur’ Calls: data -> find.package Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.0
Check: examples
Result: ERROR Running examples in ‘CooccurrenceAffinity-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: affinity > ### Title: Computes alpha, probability, expected co-occurence, median > ### interval, various confidence intervals, other indices of affinity, > ### etc. > ### Aliases: affinity > > ### ** Examples > > # when you have a binary presence absence occurrence data > # ------------------------------------------------------- > > if(requireNamespace("cooccur", quietly = TRUE)) { + data(finches, package = "cooccur") + } else { + message("The cooccur package is not installed. + You can install it with install.packages('cooccur').") + } The cooccur package is not installed. You can install it with install.packages('cooccur'). > > data(finches, package = "cooccur") Error in find.package(package, lib.loc, verbose = verbose) : there is no package called ‘cooccur’ Calls: data -> find.package Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed CovrgPlot 4.364 0.065 7.109 Flavor: r-patched-linux-x86_64

Version: 1.0
Check: examples
Result: ERROR Running examples in ‘CooccurrenceAffinity-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: affinity > ### Title: Computes alpha, probability, expected co-occurence, median > ### interval, various confidence intervals, other indices of affinity, > ### etc. > ### Aliases: affinity > > ### ** Examples > > # when you have a binary presence absence occurrence data > # ------------------------------------------------------- > > if(requireNamespace("cooccur", quietly = TRUE)) { + data(finches, package = "cooccur") + } else { + message("The cooccur package is not installed. + You can install it with install.packages('cooccur').") + } The cooccur package is not installed. You can install it with install.packages('cooccur'). > > data(finches, package = "cooccur") Error in find.package(package, lib.loc, verbose = verbose) : there is no package called ‘cooccur’ Calls: data -> find.package Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed CovrgPlot 4.358 0.051 5.387 Flavor: r-release-linux-x86_64