ALDEx2, aplot, DESeq2, dplyr, edgeR, funrar, GGally, ggplot2,
grid, lefser, limma, Maaslin2, metagenomeSeq, MicrobiomeStat,
readr, stats, SummarizedExperiment, tibble, tidyr,
ALDEx2, aplot, DESeq2, dplyr, edgeR, funrar, GGally, ggplot2,
grid, lefser, limma, Maaslin2, metagenomeSeq, MicrobiomeStat,
readr, stats, SummarizedExperiment, tibble, tidyr, ggprism
ALDEx2, aplot, DESeq2, dplyr, edgeR, GGally, ggplot2, grid,
lefser, limma, Maaslin2, metagenomeSeq, MicrobiomeStat, readr,
stats, SummarizedExperiment, tibble, tidyr, ggprism, phyloseq
ALDEx2, aplot, DESeq2, dplyr, edgeR, GGally, ggplot2, grid,
lefser, limma, Maaslin2, metagenomeSeq, MicrobiomeStat, readr,
stats, SummarizedExperiment, tibble, tidyr, ggprism, phyloseq,
patchwork
ALDEx2, aplot, DESeq2, dplyr, edgeR, GGally, ggplot2, grid,
lefser, limma, Maaslin2, metagenomeSeq, MicrobiomeStat, readr,
stats, SummarizedExperiment, tibble, tidyr, ggprism, phyloseq,
patchwork, circlize
ALDEx2, aplot, DESeq2, dplyr, edgeR, GGally, ggplot2, grid,
ggh4x, lefser, limma, Maaslin2, metagenomeSeq, MicrobiomeStat,
readr, stats, SummarizedExperiment, tibble, tidyr, ggprism,
patchwork, circlize
ALDEx2, aplot, DESeq2, dplyr, edgeR, GGally, ggplot2, grid,
ggh4x, lefser, limma, Maaslin2, metagenomeSeq, MicrobiomeStat,
readr, SummarizedExperiment, tibble, tidyr, ggprism, patchwork,
circlize
aplot, dplyr, ggplot2, grid, ggh4x, readr, tibble, tidyr,
ggprism, patchwork, ggplotify, magrittr, progress, stats,
methods, grDevices, utils
aplot, dplyr, ggplot2, grid, ggh4x, readr, tibble, tidyr,
ggprism, patchwork, ggplotify, magrittr, progress, stats,
methods, grDevices, tidygraph, ggraph, utils
covr, testthat (>= 3.0.0), cowplot, Biobase, devtools,
KEGGREST, ComplexHeatmap, ggprism, ggforce, patchwork,
ggplotify, BiocGenerics, BiocManager, magrittr, utils
covr, testthat (>= 3.0.0), cowplot, Biobase, devtools,
KEGGREST, ComplexHeatmap, ggforce, patchwork, ggplotify,
BiocGenerics, BiocManager, magrittr, utils
covr, testthat (>= 3.0.0), cowplot, Biobase, devtools,
KEGGREST, ComplexHeatmap, ggforce, ggplotify, BiocGenerics,
BiocManager, magrittr, utils
covr, testthat (>= 3.0.0), cowplot, Biobase, devtools,
KEGGREST, ComplexHeatmap, ggforce, ggplotify, BiocGenerics,
BiocManager, magrittr, utils, knitr, rmarkdown
Biobase, KEGGREST, ComplexHeatmap, ggplotify, BiocGenerics,
magrittr, utils, knitr, rmarkdown
Biobase, KEGGREST, ComplexHeatmap, BiocGenerics, knitr,
rmarkdown, testthat (>= 3.0.0), ALDEx2, DESeq2, edgeR, GGally,
limma, Maaslin2, metagenomeSeq, MicrobiomeStat,
SummarizedExperiment, circlize, lefser
Biobase, KEGGREST, ComplexHeatmap, BiocGenerics, knitr,
rmarkdown, testthat (>= 3.0.0), ALDEx2, DESeq2, edgeR, GGally,
limma, Maaslin2, metagenomeSeq, MicrobiomeStat,
SummarizedExperiment, circlize, lefser, fgsea, clusterProfiler,
enrichplot, DOSE, pathview, ggVennDiagram, UpSetR, igraph
Biobase, ggdendro, KEGGREST, ComplexHeatmap, BiocGenerics,
knitr, rmarkdown, testthat (>= 3.0.0), ALDEx2, DESeq2, edgeR,
GGally, limma, metagenomeSeq, MicrobiomeStat,
SummarizedExperiment, circlize, lefser, fgsea, clusterProfiler,
enrichplot, DOSE, ggVennDiagram, UpSetR, igraph, ggridges,
ggrepel
Biobase, ggdendro, KEGGREST, ComplexHeatmap, BiocGenerics,
knitr, rmarkdown, testthat (>= 3.0.0), ALDEx2, DESeq2, edgeR,
GGally, limma, MicrobiomeStat, SummarizedExperiment, circlize,
lefser, fgsea, clusterProfiler, enrichplot, DOSE,
ggVennDiagram, UpSetR, igraph, ggridges, ggrepel
Biobase, ggdendro, KEGGREST, ComplexHeatmap, BiocGenerics,
knitr, rmarkdown, testthat (>= 3.0.0), ALDEx2, DESeq2, edgeR,
GGally, limma, MicrobiomeStat, SummarizedExperiment, circlize,
lefser, Maaslin2, metagenomeSeq, fgsea, clusterProfiler,
enrichplot, DOSE, ggVennDiagram, UpSetR, igraph, ggridges,
ggrepel, logging
Biobase, KEGGREST, ComplexHeatmap, BiocGenerics, testthat (>=
3.0.0), ALDEx2, DESeq2, edgeR, GGally, ggdendro, limma,
Maaslin2, metagenomeSeq, MicrobiomeStat, SummarizedExperiment,
circlize, lefser, fgsea, clusterProfiler, enrichplot, DOSE,
ggVennDiagram, UpSetR, igraph