5b648d5eb7ef1edf0da4536c6366c98b *DESCRIPTION
e62637ea8a114355b985fd86c9ffbd6e *LICENSE
f9ca6e7b54d9596287f7626d54f480c5 *NAMESPACE
0ebd3e50ccb1fcd44664f24e76e370ec *NEWS.md
5e2d348c50681df8fea9fc9839ed65a7 *R/COMPOSITE.R
cf0f3522f341d5ce5c5d6fca7ae4cb39 *R/ICAMS.R
57376f1b9c72a829e2ccc04e53ebeb92 *R/ID_functions.R
64743c27f7df54c1dfe0d7905f133cc6 *R/VCF_to_catalog_functions.R
b63dc4424d2c7d5dcc71cb370d162bdc *R/chromosome_name_functions.R
5c5be0e2a22b82620293c440ca8ce35b *R/data.R
fbd1655123db848b88126b401dbe6704 *R/infer_catalog_format.R
14453544301284c3f99b2efa1c43b065 *R/other_catalog_formats.R
93d49a78fe9afc024890d2c9e8a15685 *R/plot.R
d6a1d523f77aef783d8bd8d9f0fdaa87 *R/read_write_catalog.R
4b99c5829ead055a232ae6ed5af94b88 *R/sequence_context_functions.R
a956494d3c53d3cab8d77ada0361eaaf *R/shiny_related_functions.R
da73b871575566031c50159b0d989812 *R/strandbias_functions.R
bc11805adb55b4276280e753e07292d9 *R/sysdata.rda
94094fbde8164a38870c21b2e9341f0d *R/test_functions.R
3f80e05ee977f75d01243cbfda910f4c *R/utility_functions.R
e229b948d74ee1a47889ea41d93c0952 *README.md
bda4138401de97aff242f95f5191bafb *data/all.abundance.rda
19b5904e6dbf67e981a367a417721a4e *data/catalog.row.order.rda
ff6a50b8ab0d12bb0ba18f0c83f86b38 *data/gene.expression.data.HepG2.rda
1daa2d5117d0d03f884655180116282d *data/gene.expression.data.MCF10A.rda
893f6f7852220a932ca836a8bc471927 *data/trans.ranges.GRCh37.rda
a803a3308f4f1045c4a0579d7f1341df *data/trans.ranges.GRCh38.rda
14b8defa3e1ad3d90d58bc2ad5b99314 *data/trans.ranges.GRCm38.rda
688983682aef1a10c3cd434aa07028e9 *inst/CITATION
d51cf25de39c598c9afa650cd706bc00 *inst/WORDLIST
47e64d90dab12eae3f3400658b443fc1 *inst/extdata/Mutect-vcf/Mutect.GRCh37.s1.vcf
a5f2f768f124a83f5f3196bab8cffbba *inst/extdata/Mutect-vcf/Mutect.GRCh37.s2.vcf
ab08055f2269c91cdb7d3638fcd9c049 *inst/extdata/Strelka-ID-vcf/Strelka.ID.GRCh37.s1.vcf
830eeb0447c976fd8643988345d236e5 *inst/extdata/Strelka-ID-vcf/Strelka.ID.GRCh37.s2.vcf
20fd81b0e6ccc6ed894507e79faf917b *inst/extdata/Strelka-SBS-vcf/Strelka.SBS.GRCh37.s1.vcf
8765299107b144365af5b3d1b05cafcf *inst/extdata/Strelka-SBS-vcf/Strelka.SBS.GRCh37.s2.vcf
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69517c0a38d4aad63ceaf6a9fa028c85 *inst/extdata/mutect.regress.cat.dbs.144.csv
f09e26a472bee13c2466ad3faab88022 *inst/extdata/mutect.regress.cat.dbs.78.csv
68b8bb869d3f5a6b1c89552b2dd35bc2 *inst/extdata/mutect.regress.cat.indels.csv
2f323cc5ace489c47cf212b7f53474c8 *inst/extdata/mutect.regress.cat.sbs.1536.csv
49dfb46dc735fbb14de46986dbbef19a *inst/extdata/mutect.regress.cat.sbs.192.csv
4fdcdd79f6831d96182de270e1448eb0 *inst/extdata/mutect.regress.cat.sbs.96.csv
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6c3299beeb5916b7fa775d515944de6e *inst/extdata/strelka.regress.cat.dbs.144.csv
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4af477fb9f00854054886b4d5d21c5d9 *inst/extdata/strelka.regress.cat.sbs.192.csv
81693d82934a743332d1aa3ab0b7b292 *inst/extdata/strelka.regress.cat.sbs.96.csv
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92e9a816e11aad51a43e15687e6fd5a8 *man/GetGenomeKmerCounts.Rd
43267080060c8574ebb3b8b2602198e1 *man/GetMutationLoadsFromMutectVCFs.Rd
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9a311438f03c3b6115bfabafa4cdde46 *man/RevcDBS144.Rd
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