53537c737efad1ece4ea6c026f1cc6be *DESCRIPTION
dcb05640ff20be9225710a0ab3d738e1 *NAMESPACE
6923eda08d741771d96a2be1ac339c1d *R/Coxmos_common_functions.R
ec95209c8979154a152961b4698e2612 *R/Coxmos_cox.R
5bee32185bc1eda41ca9dd629981b8d5 *R/Coxmos_coxEN.R
2f1134c390574d54664e2fd6f70f9c3d *R/Coxmos_coxSW.R
a4a578cff10f1e8abcc4789cfcee9f62 *R/Coxmos_coxmos.R
cbccca1c98c41a4dc4a5cf5ccf156f10 *R/Coxmos_dependency_functions.R
8fa3948002c599d278d287105e894170 *R/Coxmos_evaluation_functions.R
795ffe0946f9bd7168d6d210f5a7799f *R/Coxmos_isb_splsdacox_dynamic.R
051176e117e540c3b6ab910e6ebf4574 *R/Coxmos_isb_splsdrcox.R
6a70ceddacb86eb9cdfe6dbfba30d670 *R/Coxmos_isb_splsdrcox_dynamic.R
4a6952162ac1cc5e3e7c93484f09e122 *R/Coxmos_isb_splsicox.R
a52bd59e2ae206fad2890e00c314b490 *R/Coxmos_mb_coxmos.R
229a6b076f1a17014fe43f625546ccdc *R/Coxmos_mb_splsdacox_dynamic.R
a2289b27119ad5c3ca51f4623d7c1648 *R/Coxmos_mb_splsdrcox_dynamic.R
afce2a6374fca9dbd7d79c6f98afaac8 *R/Coxmos_multiblock_functions.R
1ed3909cc818ee3537628f90063c5db8 *R/Coxmos_plot_functions.R
56ea0bf6a23c2d3f3064447eba7e5843 *R/Coxmos_plot_functions_others.R
dfdedca2e1b4f08f0b237528a01bc5c4 *R/Coxmos_sb_splsdacox_dynamic.R
4b8794659e3dfe949e2da645108bbf27 *R/Coxmos_sb_splsdrcox.R
c2490446058b6640445a701ef2776cd8 *R/Coxmos_sb_splsdrcox_dynamic.R
e14656d898216af064e3c7345ccb5e93 *R/Coxmos_sb_splsicox.R
99686957a914eec05b9b374cc51f8f5e *R/Coxmos_splsdacox_dynamic.R
5ad2fc525f5f9e800cf1c42846b5a6e2 *R/Coxmos_splsdrcox.R
fd0761c30dc556ff65a0e2d518960c50 *R/Coxmos_splsdrcox_dynamic.R
89bd45d0eb84bf2c2055ebfff36db808 *R/Coxmos_splsdrcox_median.R
e1b4ee005a44bb820e8ae950ecada0ee *R/Coxmos_splsicox.R
8537df4a939633d4449ab7e873a6c69b *R/cenROC.R
9dc82df9e7c900d29086360d2fb923f6 *R/condSURV.R
055fb348509e00ba0cd3ecff3de4c5a0 *R/data.R
b2e6c42645c57336cbdd006dc9f491df *README.md
d61dfb49273a2fe28da8946ca999f6a6 *build/partial.rdb
4c074688541e4423efd8e08431ae0346 *build/vignette.rds
f71583d5e9eef06e0ffde1ddcbb35d0d *data/X_multiomic.rda
5c419f7651a7b89d113c827b267d809d *data/X_proteomic.rda
581d46d527ae505cb9f347b7fa5a076d *data/Y_multiomic.rda
2cbe93c3159b0eed9b38e3d214bb12b9 *data/Y_proteomic.rda
56aa49b658d720ab5af81f2aa55118b6 *inst/REFERENCES.bib
9d69181fec32ca506b483acdf511239c *inst/doc/Coxmos-MO-pipeline.R
10a3ab2c35f4bb2013dab150726462a6 *inst/doc/Coxmos-MO-pipeline.Rmd
2c484c831edddff2d0bc13b358af7d11 *inst/doc/Coxmos-MO-pipeline.html
d7800282331c5b1871e8e14fdc938022 *inst/doc/Coxmos-pipeline.R
56b46ed195fecd8b853d38b753c91fee *inst/doc/Coxmos-pipeline.Rmd
592c61e4bf4ef945051af0f93697c05f *inst/doc/Coxmos-pipeline.html
8072cc33651ac3572ba0f43e09ee6baf *man/Beran.Rd
3953bcfe2d7d202c17cce44f8552d5e7 *man/CV.Rd
67e4eb5eba4b9ee570959097fe22efae *man/Csurv.Rd
500b0bb0edeecd147c9749f845478a05 *man/NR.Rd
4d4070de13c05aa3556ab39002916ce3 *man/PI.Rd
9603db8a6d3f7ad6068bdf059d5c1f46 *man/RocFun.Rd
0621ba681bc66ff3ebe57f1b32f149c4 *man/X_multiomic.Rd
cebfaac3faf680c2b28880f3693dfae0 *man/X_proteomic.Rd
23142301456b73bb54326a34f23b3d00 *man/Y_multiomic.Rd
6227582b12f04e925a329eb1a2025251 *man/Y_proteomic.Rd
e6c29b10bfd000be19a4b6494d3c4561 *man/cenROC.Rd
e5f9e9e88e65a40cf14ed97829ce9d0d *man/cox.Rd
ea4066f02f32130b28894a16bb9e86b0 *man/cox.prediction.Rd
52a5b7f6c959921f8133d10943b3fa1b *man/coxEN.Rd
aaee74e0300723f21e2e9402e14223d0 *man/coxSW.Rd
0477a22e64dc4e1dfb556632d9292a6f *man/coxmos.Rd
90b37bd09f207dcf88e16921670b5b88 *man/cv.coxEN.Rd
39eb7fb646f32a240903bce4faff0115 *man/cv.coxmos.Rd
c6bd861a1108d50cf41376af7bfd6c58 *man/cv.isb.splsdacox.Rd
125f9fa9aa3835f75ec9fdcb9588c1e7 *man/cv.isb.splsdrcox.Rd
5f9191e8c9678eb6800ace01fd172c69 *man/cv.isb.splsdrcox_penalty.Rd
0dc80938d33b99d7efcbb7bfc7fb2936 *man/cv.isb.splsicox.Rd
15ffbbea40e86e3845af07c431fb54f0 *man/cv.mb.coxmos.Rd
02228a53342f792eb73dd80e124b56b2 *man/cv.mb.splsdacox.Rd
3a13cb777b2eafbc288db7f57b4b872c *man/cv.mb.splsdrcox.Rd
a0873004e6a406656e2c549c151c871b *man/cv.sb.splsdacox.Rd
f78cc590ecd61703c6467673d5dff337 *man/cv.sb.splsdrcox.Rd
cdfb02968744f5707f5962a16ac9e149 *man/cv.sb.splsdrcox_penalty.Rd
860b17b614c64c0cd8476e8b0dfefafc *man/cv.sb.splsicox.Rd
3829c1de460b445506e4f80492a4c9fb *man/cv.splsdacox.Rd
d25d3956203b1304529f869a8e295da2 *man/cv.splsdrcox.Rd
ceaaa107d716ab0af425a9de32e8c912 *man/cv.splsdrcox_penalty.Rd
5070a51043f3331ec96ee4b1d2cc5072 *man/cv.splsicox.Rd
f9295de1f297ef9b16f1e86d81808f5d *man/deleteNearZeroCoefficientOfVariation.Rd
ee45e79f01494a4fe4f9d4c84b8305e6 *man/deleteNearZeroCoefficientOfVariation.mb.Rd
5e02c255331b66871cbdeb6b1a043b5a *man/deleteZeroOrNearZeroVariance.Rd
f33e3d79e059191f958c4ebb16d2e671 *man/deleteZeroOrNearZeroVariance.mb.Rd
743aa67344235113cb21663f1e9b6e3d *man/dnorkernel.Rd
7b0e3575120199ae3140e875013686da *man/eval_Coxmos_model_per_variable.Rd
d076f86099274d44b6cb0d9d07262726 *man/eval_Coxmos_model_per_variable.list.Rd
146412f8000adbdab97fa4fd0e4d6d48 *man/eval_Coxmos_models.Rd
54cbd0a422a5f1e8cc1dd2bf7e887012 *man/factorToBinary.Rd
9eb6752ba902680ba940179361860466 *man/getAutoKM.Rd
e3e2715fa6fed0f8f76ea0dfbd333327 *man/getAutoKM.list.Rd
a640c1e7c434cbe00e4215915f3f7c1d *man/getCutoffAutoKM.Rd
b91cf23d12655d2febc844305b2e8af6 *man/getCutoffAutoKM.list.Rd
caec323fb31ac85cf279e463adf73132 *man/getDesign.MB.Rd
71a85cf47585213d83e04e84f9995fcb *man/getEPV.Rd
dbda6a35337d18051116a42183eeda4a *man/getEPV.mb.Rd
13787a33902878b7006249faeaf7bdcc *man/getTestKM.Rd
65bda63fa0fd7c63bcc109b178054b2c *man/getTestKM.list.Rd
1fed60f0c938f24eae80cb95717257f1 *man/getTrainTest.Rd
9f0d84c63c13d68f842daf02839ce5d0 *man/integ.Rd
6d5ca7f48146237fa28ecddb6f056f6a *man/isb.splsdacox.Rd
29a86751ce4ff2a79c312ed29af88c84 *man/isb.splsdrcox.Rd
6db9494a5889bed8c1e84a9496122bd6 *man/isb.splsdrcox_penalty.Rd
b876897bbab6404755658ca176b7ac84 *man/isb.splsicox.Rd
940c2127ddd6e0c2c187b0c4bc4a3397 *man/ker_dis_i.Rd
7e91e850784797a3199536a7f14f001d *man/kfunc.Rd
14431f3812cc7b1f77bee6ff5141ea29 *man/kfunction.Rd
3b41e67cb41ff04521d307465b2df79f *man/loadingplot.Coxmos.Rd
48507c12840a50cc0cc8724cb4f64053 *man/loadingplot.fromVector.Coxmos.Rd
77c022b350b44944e3b146f5d5a28f73 *man/mb.coxmos.Rd
b143d478d45bae07e78eda8d2ecaf2b9 *man/mb.splsdacox.Rd
bd8ca07e923577f779342ec993400eb5 *man/mb.splsdrcox.Rd
1ecf71d06d594a4290188e98a10ebff1 *man/muro.Rd
264c5ab26e89c513b0939078231a80b1 *man/norm01.Rd
6d6651ac33ed63875b5529a3a2d5aead *man/plot_Coxmos.MB.PLS.model.Rd
85e0bfd3677827bee1e034ae20d8d559 *man/plot_Coxmos.PLS.model.Rd
f39743fa20cea052ecd283db34b56fbb *man/plot_cox.event.Rd
d678bae3201b4c707ae336070003c123 *man/plot_cox.event.list.Rd
542aaa22c9eac71b68f2f80793ff644f *man/plot_divergent.biplot.Rd
2a2bb8aa581489a18ece000f6113c3ef *man/plot_evaluation.Rd
8fc469e701e447dfb0901107729f7cd5 *man/plot_evaluation.list.Rd
5b6328371a94ca90f1b6cf06d1073d9d *man/plot_events.Rd
b3f4cb1c2a6c4628911ea67609c9f882 *man/plot_forest.Rd
b0b45e0f1f1178d4cd557466de3f2bac *man/plot_forest.list.Rd
76df2a6e42aedb1ab16361c297e2f556 *man/plot_multipleObservations.LP.Rd
d7c53c94741539f8d257774e49123e65 *man/plot_multipleObservations.LP.list.Rd
5f0d979583bb804c3308ec5f0c115661 *man/plot_observation.eventDensity.Rd
4eacf6f55a2efab8cb660a92b543cb8d *man/plot_observation.eventHistogram.Rd
15630b138aaacb9878ba19fe2dfab10b *man/plot_observation.pseudobeta.Rd
357703fb983a9b9571a29ffbb76022a0 *man/plot_observation.pseudobeta.list.Rd
0c971a00ec1c36abde85e01eccc24d61 *man/plot_proportionalHazard.Rd
3d70ba6ae289421bf38b0c1207751eac *man/plot_proportionalHazard.list.Rd
d4eeb1e2780f49b3d8f9f5dde6784996 *man/plot_pseudobeta.Rd
f8c5fc721e7b6c2b64e92ad2fb5d9a6d *man/plot_pseudobeta.list.Rd
4d97d25b6b0e96bc21002516fffc19bd *man/plot_sPLS_Coxmos.Rd
59eaa75e8ebead20b84d59300ca4164e *man/plot_time.list.Rd
569ab41819580facaf2b321cddd75cfe *man/predict.Coxmos.Rd
63d2359c25df7ee9db6bad40374b59ca *man/print.Coxmos.Rd
fd1803d71e6a797d7ee80a9d843c0ba5 *man/save_ggplot.Rd
af80dfe7be277b1739b1dd310da9c8a9 *man/save_ggplot_lst.Rd
b7e57b07e103b67da89061827be5d443 *man/sb.splsdacox.Rd
51ab01c4033c5d33df69c51e47792d85 *man/sb.splsdrcox.Rd
4efb1f28d8d2eb87a24b9c5d148a0eb1 *man/sb.splsdrcox_penalty.Rd
9ec74a4d072c7393835b1b35a36bed57 *man/sb.splsicox.Rd
d337ac8a37cba8edcda6333546b06baa *man/splsdacox.Rd
eba85e4db3b1eb446e25b0186d631838 *man/splsdrcox.Rd
f926c0f0b99693be8e9c2a68768a2f38 *man/splsdrcox_penalty.Rd
ad76339572b0582d71f20a04e602b598 *man/splsicox.Rd
2e72fcd4d11cad854b3a27bf169e73ee *man/w.starplot.Coxmos.Rd
42be7d25d0a7c294d5b7417d5e35193b *man/wIQR.Rd
a174157a0645016023a68663241584ca *man/wbw.Rd
37fcc2f278c8585fb56a6826c864bbcc *man/wquantile.Rd
7d6e36746567effb09389b66fbacf601 *man/wvar.Rd
1995962ac6938b5c0c34502043a49db9 *src/Coxmos_init.c
329e173714e4a29205ad32a71e5dae4f *src/condSURV_init.c
574d371f6f8e12537c58470a100fdd9a *src/survivalBIV.c
10a3ab2c35f4bb2013dab150726462a6 *vignettes/Coxmos-MO-pipeline.Rmd
56b46ed195fecd8b853d38b753c91fee *vignettes/Coxmos-pipeline.Rmd
