1ad46555caa7976c0aca6d1537ca8b67 *DESCRIPTION
210472eff0685f0b394009624662f271 *NAMESPACE
5f5c01b4336e91105517a56684b26bc6 *NEWS.md
fc78f24f46e851b0ac8ba422b3618ea3 *R/ProbKMA-export.R
bb77cbecb218f50ffa8670981f098886 *R/S4_classes.R
46e8ef3e5f295d3f98f4f09975c913d7 *R/S4_constructor.R
318d8ac67b5a57c1b9c81497cbf24db8 *R/S4_methods.R
434e59d0f3b431f61d425caa19e0fba6 *R/S4_utilities.R
63c0c251bec2df4c8c547c9241375a19 *R/checks.R
882455e6fcf9c7373e16db681c280997 *R/cluster_candidate_motifs.R
9ef073509962c642a5c6f68c42473f34 *R/cluster_candidate_motifs_plot.R
c54625fd9a58b9b2851a23886f364fde *R/compare_nodes.R
af7b9855232e7b6b23ca52dc4ec90019 *R/discoverMotifs.R
a2c6b942ed72ad00508dfe02c11b93c2 *R/diss_d0_d1_L2.R
23e5ccea065d16c182c40f2dca6251c2 *R/domain.R
a2744e6c5c783cf5793ee44fddb62da2 *R/filter_candidate_motifs.R
6dc4a41674d70dd486e8e1f8082fd971 *R/find_min_diss.R
cb2782b8976cd41f6c0a7b84db649fec *R/find_occurrences.R
9d0f6823e43706e64c29b7d4022b06ce *R/find_recommended_path.R
cf5cb61c2aba0c95e55907a0e0667c0e *R/funMoDisco-pkg.R
cccbd0bf96bc7ba6060e4629dcd10f5d *R/get_accolites.R
0d23d2e5bc3717d76eaef0d09694265e *R/get_minidend.R
2720f606e3e8bad927493e0f20fe8534 *R/get_parents.R
0845a63ab77976965c6bebf0818cdf9e *R/get_path_complete.R
960751e5052bcecc9e765d5b4dbc97fd *R/mapply_custom.R
b17b2233796aac019f055a7a189858f5 *R/motifs_search.R
63b5d81a332606754f039e56c90a0c38 *R/motifs_search_plot.R
0cc2d222db3a10aa8104ee58e5266f1c *R/padding.R
28f938cf97f7a15fb6200ade5ad2e0bd *R/probKMA_plot.R
ab22e6b78a7439a43f9ca60ecaf5790e *R/probKMA_silhouette_filter.R
e7d82896ec1a795b501069d05cb66599 *R/probKMA_silhouette_plot.R
78b1827747d06cacc0583f160cd8e7f5 *R/probKMA_wrap.R
9e374fff65a40a0205b6c4202a833869 *R/recommend_node.R
6f6fe821a5fb137adaac99a2fd0d4e40 *R/select_domain.R
da1139327291bf088a04e216cfefcbfe *R/shiny.R
ad09ff5283835f7839fae4f344966b4f *R/simulated200.R
e1ca39c0858bebbf768a5af6c3a3e295 *R/simulatedHighDimensional.R
f8d3db985362339593c85ebc1c3ce776 *R/zzz.R
41b8d944770d3de0e20a5ddb312b24ce *README.md
1961639f6f4f7f9efffa91b624b3d060 *build/partial.rdb
f12a1dbfd15cc88cfa800e89a6a0d227 *build/vignette.rds
a5efa96a8a19098aa4e5424db9d914ce *data/simulated200.rda
bde15950ffea7fad514bb68cb7a5520b *data/simulatedHighDimensional.rda
6e04d2e4c58cd36d77f255947d0eacaf *inst/CITATION
f59e5256e155b260d04243869c17e93b *inst/doc/funMoDisco_vignette.pdf
716403aa807bd9056ada8eca6bc89fb2 *inst/doc/funMoDisco_vignette.pdf.asis
eeb7607787b40c58c2db9685e5939eeb *inst/tinytest/test_mtfd.R
31fb785bc4e80bc27f9262fd47bc6981 *man/ProbKMA.Rd
16385b6a0aa8ceffd45da84dab2cb008 *man/add_error_to_motif.Rd
5e7dc8caa252f1385ec343bbd90515b2 *man/add_motif.Rd
eddc1848b845b39ed0466b2ec91f9129 *man/cluster_candidate_motifs.Rd
6758f38a9cc7d735fb66aee5c033407c *man/cluster_candidate_motifs_plot.Rd
2ec7e9d959360bf64a006fdff2797fbc *man/compare_nodes.Rd
156f849deda4b52ac69ad0654071ad8f *man/discoverMotifs.Rd
a55ae41f938692ccbfb2eca47f52e19a *man/dot-check_fits.Rd
143b30b93d436e5fd559b91798f01cb8 *man/dot-diss_d0_d1_L2.Rd
8cf37e36a5d9867956323d4061d8728c *man/dot-domain.Rd
f07465df55efdd1d41d60d71989ed2a3 *man/dot-find_min_diss.Rd
99706e5f823335e5bcda822ca4e9c966 *man/dot-find_occurrences.Rd
921fda8bcc497dbf0776df24f34643a6 *man/dot-generate_coefficients.Rd
5b41cd6b44689b70af9bdbefcdd211cf *man/dot-mapply_custom.Rd
df55f49fc43c6178b9c9915cf4034f74 *man/dot-resample.Rd
08fef2e92bc41488b763f1727876d43f *man/dot-select_domain.Rd
7d17c7c20392f4171a95ff36a79d569d *man/dot-transform_list.Rd
ac8abe80ad14134d96a950a590f34961 *man/dot-transform_to_matrix.Rd
36e2fcca05b8855a657f55baefdc4312 *man/filter_candidate_motifs.Rd
7dc93a84adb2f86494d476ed0a456dbc *man/find_recommended_path.Rd
2ea4bd1d419dcd3a1624eb8b67b3058c *man/funMoDisco-package.Rd
36022227e8ce1fa3bc105ee133adcfc0 *man/generateCurves-motifSimulation-method.Rd
4a6d2547b92c2103ff38824fe119eac1 *man/generateCurves.Rd
d853378501ca44dc988bc48318d63225 *man/generate_background_curve.Rd
8bd1fb14883cc6338852505c0e615d69 *man/generate_curve_vector.Rd
9ee2345a1f7d0fa2b0cd9c3dc334d331 *man/get_accolites.Rd
a022df4ddd250b343332aa8ea896168e *man/get_minidend.Rd
c63531b2b9c48c0240ccef6f8a4bb16c *man/get_parents.Rd
a242fec308cc949a6ca543f8cfab8e38 *man/get_path_complete.Rd
7b755356fec0f7f109cc88e5c58f032f *man/initialChecks.Rd
84d2e7d160dac0d3e089ca150f3ed3cc *man/motifSimulation-class.Rd
beb5571a6b467186f22800d0bf088bbb *man/motifSimulationApp.Rd
b0617a9e28676a3c697912849085376e *man/motifSimulationBuilder.Rd
839c66945c320c47175d2b6da1b7183a *man/motifs_search.Rd
22b40cce3ec0e8b214d8975d8392bbaa *man/motifs_search_plot.Rd
d0be457f0b1eabc144aaa4891ae5785f *man/padding.Rd
9b3536b86a5c465634334e8a04f9cac7 *man/plot_motifs-motifSimulation-method.Rd
1b80b9ee7bca37f5f4d62a46d0a3a8b6 *man/plot_motifs.Rd
07f3a8df22b796a39a9fd089c4bf180a *man/probKMA_plot.Rd
c4b99e2b652cff18e9b744312886124c *man/probKMA_silhouette_filter.Rd
c9215a1ebb341bf4b43d680449c2b4bc *man/probKMA_silhouette_plot.Rd
21c0a218015f6d51d281332031005432 *man/probKMA_wrap.Rd
b3c5ff74ecb45617288b85daa10f70e7 *man/recommend_node.Rd
9a3c8a7673b40a420e5acd2e45279999 *man/simulated200.Rd
dfd33fbe7c5a5a70881edc31d3a0b87a *man/simulatedHighDimensional.Rd
232081e97a02dd76ea502ac66e910ddc *man/to_motifDiscovery-list-method.Rd
59523ac303a1d4d84a3c4ea71eaeedfd *man/to_motifDiscovery.Rd
637f3fb4766f1ba35a259ac14257f030 *src/DissimilarityH1.cpp
576a54458221b9c2cd578bea9548420c *src/DissimilarityL2.cpp
49d3c5ce7328d89c0f8cfa8461aa5bbd *src/Makevars
49d3c5ce7328d89c0f8cfa8461aa5bbd *src/Makevars.win
145cef835748d49b956d94bf263b8c77 *src/MotifH1.cpp
0c360f87dc801539492c4b16b9a8da2a *src/MotifL2.cpp
9ba2400af2e9c90188c676f6cae57e43 *src/MotifSobol.cpp
1a0009b4837c06f1d6c30672e979df69 *src/Parameters.cpp
f0da1d98c6273df8979e9a6c439d0eb4 *src/PerformanceH1.cpp
14e46ad47c18f7eb56bf2e84a9165d7e *src/PerformanceL2.cpp
093f754a67cf883f688b5035f75811be *src/RcppExports.cpp
82aeb95c0bb8111fcff9f186400f24c9 *src/SobolDiss.cpp
ff76c22a6381357fab2ab361373d0d71 *src/include/Dissimilarity.hpp
7c7136d68f47c3f57e2c716ad68189d6 *src/include/Dissimilarity.ipp
b79065261c34d1fa3bcbbdfb6af54ccc *src/include/Factory.hpp
09e5b207cc906a8fc2021e27ba284190 *src/include/Motif.hpp
570c52cabe7bdd6296d89bf40fabec3f *src/include/Motif.ipp
e19f3b04a4d123409053e5c43c67513d *src/include/Parameters.hpp
b60c82da2e6e23077ac1ff1490692b88 *src/include/PerformanceIndex.hpp
a03bf5f687b07ce7b3c9e86d0eba0217 *src/include/PerformanceIndex.ipp
3cbcbb3a7fa5150b747fea7286608680 *src/include/ProbKMA.hpp
6337bc770d9e994ecd38f02d683fc566 *src/include/TypeTraits.hpp
de1ef7781c7e9e3cf65d813740d6b73d *src/include/Utilities.hpp
e4159732a08ffaa27db44bb63fda4e8c *src/probKMAImpl.cpp
01f1cdd0fb8acd844ea8ec46e25f7c44 *tests/tinytest.R
fe27fa613b621766da06fc59ddd83fc8 *vignettes/funMoDisco_vignette.Rmd
716403aa807bd9056ada8eca6bc89fb2 *vignettes/funMoDisco_vignette.pdf.asis
9eae5d6ccf54d32b03e33b9ee92bd6e8 *vignettes/index.Rmd
