* using log directory 'd:/Rcompile/CRANpkg/local/4.4/promor.Rcheck'
* using R version 4.4.0 (2024-04-24 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'promor/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'promor' version '0.2.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'promor' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [5s] OK
* checking whether the package can be loaded with stated dependencies ... [5s] OK
* checking whether the package can be unloaded cleanly ... [5s] OK
* checking whether the namespace can be loaded with stated dependencies ... [5s] OK
* checking whether the namespace can be unloaded cleanly ... [5s] OK
* checking loading without being on the library search path ... [5s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [13s] OK
* checking Rd files ... [1s] NOTE
checkRd: (-1) impute_plot.Rd:32: Lost braces; missing escapes or markup?
    32 | \item{global}{Logical. If \code{TRUE} ({default}), a global density plot is
       |                                        ^
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [82s] ERROR
Running examples in 'promor-Ex.R' failed
The error most likely occurred in:

> ### Name: aver_techreps
> ### Title: Compute average intensity
> ### Aliases: aver_techreps
> 
> ### ** Examples
> 
> ## Use a data set containing technical replicates to create a raw_df object
> raw_df <- create_df(
+ prot_groups = "https://raw.githubusercontent.com/caranathunge/promor_example_data/main/pg2.txt",
+ exp_design = "https://raw.githubusercontent.com/caranathunge/promor_example_data/main/ed2.txt",
+ tech_reps = TRUE
+ )
Warning in file(file, "rt") :
  URL 'https://raw.githubusercontent.com/caranathunge/promor_example_data/main/ed2.txt': Timeout of 60 seconds was reached
Error in file(file, "rt") : 
  cannot open the connection to 'https://raw.githubusercontent.com/caranathunge/promor_example_data/main/ed2.txt'
Calls: create_df -> read.csv -> read.table -> file
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [12s] OK
  Running 'testthat.R' [12s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [2s] OK
* checking PDF version of manual ... [28s] OK
* checking HTML version of manual ... [5s] OK
* DONE
Status: 1 ERROR, 1 NOTE