* using log directory 'd:/Rcompile/CRANpkg/local/4.3/metaumbrella.Rcheck' * using R version 4.3.3 (2024-02-29 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'metaumbrella/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'metaumbrella' version '1.0.11' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'metaumbrella' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [4s] OK * checking whether the package can be loaded with stated dependencies ... [3s] OK * checking whether the package can be unloaded cleanly ... [3s] OK * checking whether the namespace can be loaded with stated dependencies ... [3s] OK * checking whether the namespace can be unloaded cleanly ... [4s] OK * checking loading without being on the library search path ... [4s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [25s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [50s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [569s] ERROR Running 'spelling.R' [0s] Running 'testthat.R' [568s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(metaumbrella) > > test_check("metaumbrella") Analyzing factor: A Analyzing factor: A Analyzing factor: Pharmacological Analyzing factor: Pharmacological Analyzing factor: Pharmacological Analyzing factor: Physically_active Analyzing factor: Physically_active Analyzing factor: Physically_active The pre/post correlation was calculated using values indicated in studies: Ray (2014) / Livingston (2010) / Israel (2014) / Sosa (2018) / Haulman (2015) / Esquibel (2007) / Ledoux (1982) / Bell (1989) / Canchola (2008) / Gonzalez (2003) / Boucneau (2000) Analyzing factor: gestational_diabetes Analyzing factor: gestational_diabetes Analyzing factor: ASD Analyzing factor: ASD Analyzing factor: ASD Analyzing factor: SSRI Analyzing factor: SSRI Analyzing factor: Smoking Analyzing factor: Smoking Analyzing factor: Smoking Analyzing factor: Smoking Analyzing factor: Gestational_hypertension Analyzing factor: Gestational_hypertension Analyzing factor: Pharmacological Analyzing factor: Pharmacological Analyzing factor: Surgical Analyzing factor: ADHD Analyzing factor: ASD Analyzing factor: dyslexia Analyzing factor: ID Analyzing factor: Yoga Analyzing factor: Aerobic training Analyzing factor: Resistance training Analyzing factor: Mindfulness Analyzing factor: ID Analyzing factor: Smoking Analyzing factor: SSRI Analyzing factor: Yoga Analyzing factor: Pharmacological Analyzing factor: ADHD Analyzing factor: Pharmacological Analyzing factor: ADHD Analyzing factor: A Analyzing factor: Pharmacological Analyzing factor: Pharmacological Analyzing factor: Weisel 2020 In factor 'Weisel 2020': - study: 'Enock (2014)' contains multiple outcomes - study: 'Pham (2016)' contains multiple outcomes In factor 'Weisel 2020' some studies have multiple outcomes but they are not associated with any within-study correlation (which can be indicated in the 'r' column of the dataset). A value of r = 0.5 is assumed. [ FAIL 2 | WARN 7 | SKIP 59 | PASS 614 ] ══ Skipped tests (59) ══════════════════════════════════════════════════════════ • On CRAN (59): 'test-esb_test.R:10:5', 'test-esb_test.R:77:5', 'test-esb_test.R:138:5', 'test-esb_test.R:181:5', 'test-esb_test.R:234:5', 'test-esb_test.R:247:5', 'test-esb_test.R:299:5', 'test-esb_test.R:354:5', 'test-estimate_n_from_es.R:10:3', 'test-estimate_n_from_es.R:47:3', 'test-estimate_n_from_es.R:94:3', 'test-estimate_n_from_es.R:135:3', 'test-format_dataset.R:12:3', 'test-format_dataset.R:30:3', 'test-format_dataset.R:53:3', 'test-format_dataset.R:75:3', 'test-format_dataset.R:101:3', 'test-format_dataset.R:142:3', 'test-format_dataset.R:176:3', 'test-format_dataset.R:214:3', 'test-format_dataset.R:254:3', 'test-format_dataset.R:305:3', 'test-functions_multilevel.R:5:3', 'test-functions_multilevel.R:51:3', 'test-functions_multilevel.R:86:3', 'test-functions_multilevel.R:119:3', 'test-functions_multilevel.R:164:3', 'test-umbrella.R:8:3', 'test-umbrella.R:15:3', 'test-umbrella.R:47:3', 'test-umbrella.R:61:3', 'test-umbrella.R:82:3', 'test-umbrella.R:96:3', 'test-umbrella.R:124:3', 'test-umbrella.R:153:3', 'test-umbrella.R:172:3', 'test-umbrella.R:191:3', 'test-umbrella.R:415:3', 'test-umbrella.R:428:3', 'test-umbrella.R:446:3', 'test-umbrella.R:461:3', 'test-umbrella.R:477:3', 'test-umbrella.R:491:3', 'test-umbrella.R:510:3', 'test-umbrella.R:529:3', 'test-umbrella.R:547:3', 'test-umbrella.R:572:3', 'test-umbrella.R:589:3', 'test-umbrella.R:604:3', 'test-umbrella.R:624:3', 'test-umbrella.R:641:3', 'test-umbrella.R:658:3', 'test-umbrella.R:675:3', 'test-umbrella.R:692:3', 'test-umbrella.R:709:3', 'test-umbrella.R:726:3', 'test-umbrella.R:746:3', 'test-umbrella.R:791:3', 'test-umbrella.R:836:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-functions_meta.R:411:3'): meta_gen correctly estimates the prediction interval size from R ── as.numeric(as.character(umb$pi_lo)) (`actual`) not equal to as.numeric(as.character(meta$lower.predict)) (`expected`). `actual`: -0.5658 `expected`: -0.5630 ── Failure ('test-functions_meta.R:412:3'): meta_gen correctly estimates the prediction interval size from R ── as.numeric(as.character(umb$pi_up)) (`actual`) not equal to as.numeric(as.character(meta$upper.predict)) (`expected`). `actual`: 0.8808 `expected`: 0.8781 [ FAIL 2 | WARN 7 | SKIP 59 | PASS 614 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [170s] OK * checking PDF version of manual ... [24s] OK * checking HTML version of manual ... [7s] OK * DONE Status: 1 ERROR