* using log directory 'd:/Rcompile/CRANpkg/local/4.3/rPDBapi.Rcheck'
* using R version 4.3.3 (2024-02-29 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'rPDBapi/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rPDBapi' version '1.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rPDBapi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [1s] OK
* checking whether the package can be unloaded cleanly ... [1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [6s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [7s] ERROR
Running examples in 'rPDBapi-Ex.R' failed
The error most likely occurred in:

> ### Name: perform_search
> ### Title: Perform a Search in the RCSB PDB
> ### Aliases: perform_search
> 
> ### ** Examples
> 
> search_operator = InOperator(value=c("Mus musculus", "Homo sapiens"),
+ attribute="rcsb_entity_source_organism.taxonomy_lineage.name")
> return_type = "NON_POLYMER_ENTITY"
> results = perform_search(search_operator, return_type)
Querying RCSB Search with the following parameters:
{
  "query": {
    "type": "terminal",
    "service": "text",
    "parameters": {
      "attribute": "rcsb_entity_source_organism.taxonomy_lineage.name",
      "operator": "in",
      "value": ["Mus musculus", "Homo sapiens"]
    }
  },
  "request_options": {
    "return_all_hits": true
  },
  "return_type": "non_polymer_entity"
}
Error in perform_search_with_graph(query_object = search_operator, return_type = return_type,  : 
  Request failed with:{"timestamp":"2024-05-15T13:04:29.721+00:00","status":415,"error":"Unsupported Media Type","path":"/rcsbsearch/v2/query"}
Calls: perform_search -> perform_search_with_graph
Execution halted
* checking PDF version of manual ... [17s] OK
* checking HTML version of manual ... [5s] OK
* DONE
Status: 1 ERROR