* using log directory 'd:/Rcompile/CRANpkg/local/4.5/fslr.Rcheck'
* using R Under development (unstable) (2024-11-07 r87302 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'fslr/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'fslr' version '2.25.3'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'fslr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s] OK
* checking whether the package can be unloaded cleanly ... [1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s] OK
* checking loading without being on the library search path ... [1s] OK
* checking whether startup messages can be suppressed ... [1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s] OK
* checking Rd files ... [3s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  check_file.Rd: checkimg
  fast.Rd: readnii
  flirt.Rd: readnii
  flirt_apply.Rd: readnii
  fnirt.Rd: readnii
  fnirt_with_affine.Rd: readnii
  fnirt_with_affine_apply.Rd: readnii
  fsl_anat.Rd: checkimg
  fsl_applywarp.Rd: readnii
  fsl_biascorrect.Rd: readnii
  fsl_cluster.Rd: readnii
  fsl_deface.Rd: readnii
  fsl_resample.Rd: readnii
  fslabs.Rd: readnii
  fslacos.Rd: readnii
  fsladd.Rd: readnii
  fslasin.Rd: readnii
  fslatan.Rd: readnii
  fslbet.Rd: readnii
  fslbin.Rd: readnii
  fslbinv.Rd: readnii
  fslchfiletype.Rd: readnii
  fslcmd.Rd: readnii
  fslcos.Rd: readnii
  fslcpgeom.Rd: readnii
  fsldilate.Rd: readnii
  fsldiv.Rd: readnii
  fsledge.Rd: readnii
  fslepi_reg.Rd: readnii
  fslerode.Rd: readnii
  fslexp.Rd: readnii
  fslfill.Rd: readnii
  fslfill2.Rd: readnii
  fslhd.Rd: checkimg
  fslindex.Rd: readnii
  fsllog.Rd: readnii
  fslmask.Rd: readnii
  fslmaths.Rd: readnii
  fslmerge.Rd: readnii
  fslmul.Rd: readnii
  fslnan.Rd: readnii
  fslnanm.Rd: readnii
  fslor.Rd: readnii
  fslorient.Rd: readnii
  fslrand.Rd: readnii
  fslrandn.Rd: readnii
  fslrange.Rd: checkimg
  fslrecip.Rd: readnii
  fslrem.Rd: readnii
  fslreorient2std.Rd: readnii
  fslrobustfov.Rd: readnii
  fslroi.Rd: readnii
  fslsin.Rd: readnii
  fslslicetimer.Rd: readnii
  fslsmooth.Rd: readnii
  fslsplit.Rd: readnii
  fslsqr.Rd: readnii
  fslsqrt.Rd: readnii
  fslstats.Rd: checkimg
  fslsub.Rd: readnii
  fslsub2.Rd: readnii
  fslswapdim.Rd: readnii
  fsltan.Rd: readnii
  fslthresh.Rd: readnii
  fslval.Rd: checkimg
  fslview.Rd: checkimg
  fslvol.Rd: voxdim
  fslxor.Rd: readnii
  getForms.Rd: checkimg
  mcflirt.Rd: readnii
  melodic.Rd: checkimg
  mni_img.Rd: nifti
  readrpi.Rd: readnii
  susan.Rd: readnii
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [9s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [14s] OK
* checking PDF version of manual ... [28s] OK
* checking HTML version of manual ... [33s] OK
* DONE
Status: 1 NOTE