* using log directory 'd:/Rcompile/CRANpkg/local/4.0/pubh.Rcheck' * using R version 4.0.5 (2021-03-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'pubh/DESCRIPTION' ... OK * this is package 'pubh' version '1.2.5' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'pubh' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [17s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [133s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [90s] WARNING Error(s) in re-building vignettes: --- re-building 'introduction.Rmd' using rmarkdown -- Attaching packages --------------------------------------- tidyverse 1.3.1 -- v ggplot2 3.3.5 v purrr 0.3.4 v tibble 3.1.6 v dplyr 1.0.8 v tidyr 1.2.0 v stringr 1.4.0 v readr 2.1.2 v forcats 0.5.1 -- Conflicts ------------------------------------------ tidyverse_conflicts() -- x dplyr::filter() masks stats::filter() x dplyr::lag() masks stats::lag() Attaching package: 'rstatix' The following object is masked from 'package:stats': filter Loading required package: emmeans Loading required package: ggformula Loading required package: ggstance Attaching package: 'ggstance' The following objects are masked from 'package:ggplot2': GeomErrorbarh, geom_errorbarh Loading required package: scales Attaching package: 'scales' The following object is masked from 'package:purrr': discard The following object is masked from 'package:readr': col_factor Loading required package: ggridges New to ggformula? Try the tutorials: learnr::run_tutorial("introduction", package = "ggformula") learnr::run_tutorial("refining", package = "ggformula") Loading required package: gtsummary Loading required package: huxtable Attaching package: 'huxtable' The following object is masked from 'package:gtsummary': as_flextable The following object is masked from 'package:scales': number_format The following object is masked from 'package:dplyr': add_rownames The following object is masked from 'package:ggplot2': theme_grey Loading required package: magrittr Attaching package: 'magrittr' The following object is masked from 'package:purrr': set_names The following object is masked from 'package:tidyr': extract Attaching package: 'sjlabelled' The following object is masked from 'package:huxtable': set_label The following object is masked from 'package:forcats': as_factor The following object is masked from 'package:dplyr': as_label The following object is masked from 'package:ggplot2': as_label Learn more about sjPlot with 'browseVignettes("sjPlot")'. Attaching package: 'sjPlot' The following object is masked from 'package:huxtable': font_size --- finished re-building 'introduction.Rmd' --- re-building 'regression.Rmd' using rmarkdown -- Attaching packages --------------------------------------- tidyverse 1.3.1 -- v ggplot2 3.3.5 v purrr 0.3.4 v tibble 3.1.6 v dplyr 1.0.8 v tidyr 1.2.0 v stringr 1.4.0 v readr 2.1.2 v forcats 0.5.1 -- Conflicts ------------------------------------------ tidyverse_conflicts() -- x dplyr::filter() masks stats::filter() x dplyr::lag() masks stats::lag() Attaching package: 'rstatix' The following object is masked from 'package:stats': filter Attaching package: 'jtools' The following object is masked from 'package:parameters': center Loading required package: emmeans Loading required package: ggformula Loading required package: ggstance Attaching package: 'ggstance' The following objects are masked from 'package:ggplot2': GeomErrorbarh, geom_errorbarh Loading required package: scales Attaching package: 'scales' The following object is masked from 'package:purrr': discard The following object is masked from 'package:readr': col_factor Loading required package: ggridges New to ggformula? Try the tutorials: learnr::run_tutorial("introduction", package = "ggformula") learnr::run_tutorial("refining", package = "ggformula") Loading required package: gtsummary Loading required package: huxtable Attaching package: 'huxtable' The following object is masked from 'package:gtsummary': as_flextable The following object is masked from 'package:scales': number_format The following objects are masked from 'package:performance': print_html, print_md The following objects are masked from 'package:parameters': print_html, print_md The following object is masked from 'package:dplyr': add_rownames The following object is masked from 'package:ggplot2': theme_grey Loading required package: magrittr Attaching package: 'magrittr' The following object is masked from 'package:purrr': set_names The following object is masked from 'package:tidyr': extract Attaching package: 'sjlabelled' The following object is masked from 'package:huxtable': set_label The following object is masked from 'package:forcats': as_factor The following object is masked from 'package:dplyr': as_label The following object is masked from 'package:ggplot2': as_label Attaching package: 'sjPlot' The following object is masked from 'package:huxtable': font_size Quitting from lines 297-300 (regression.Rmd) Error: processing vignette 'regression.Rmd' failed with diagnostics: At least one layer must contain all faceting variables: `group`. * Plot is missing `group` * Layer 1 is missing `group` --- failed re-building 'regression.Rmd' SUMMARY: processing the following file failed: 'regression.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... OK * DONE Status: 1 WARNING