* using log directory 'd:/Rcompile/CRANpkg/local/4.0/STAR.Rcheck' * using R version 4.0.5 (2021-03-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'STAR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'STAR' version '0.3-7' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'STAR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to 'codetools' which was already attached by Depends. Please remove these calls from your code. Packages in Depends field not imported from: 'codetools' 'gss' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [27s] NOTE as.spikeTrain: no visible global function definition for 'spikeTimes' gamObj.gampsth: no visible binding for global variable 'PoissonF' gammaMLE: multiple local function definitions for 'rFct' with different formal arguments gssObj.gsspsth: no visible binding for global variable 'gfit' gssObj.gsspsth0: no visible binding for global variable 'gfit' gsslockedTrain: no visible global function definition for 'gssanova' gsslockedTrain0: no visible global function definition for 'gssanova0' gsspsth: no visible global function definition for 'gssanova' gsspsth0: no visible global function definition for 'gssanova0' invgaussMLE: multiple local function definitions for 'rFct' with different formal arguments lines.CountingProcessSamplePath: no visible binding for global variable 'st' mkAR: no visible binding for global variable 'lN.1' mkM2U: no visible global function definition for 'ssden' mkM2U : : no visible global function definition for 'dssden' mkM2U : dFct: no visible global function definition for 'dssden' mkPostSimAnalysis: no visible global function definition for 'findGlobals' plot.ssanova: no visible global function definition for 'X11' plot.ssanova0: no visible global function definition for 'X11' qqDuration: no visible binding for global variable 'yi' qqDuration: no visible binding for global variable 'si' reportHTML.gam: no visible global function definition for 'png' reportHTML.gam: no visible global function definition for 'dev.off' reportHTML.repeatedTrain: no visible global function definition for 'png' reportHTML.repeatedTrain: no visible global function definition for 'dev.off' reportHTML.spikeTrain: no visible global function definition for 'png' reportHTML.spikeTrain: no visible global function definition for 'dev.off' reportHTML.spikeTrain : : no visible global function definition for 'png' reportHTML.spikeTrain : : no visible global function definition for 'dev.off' thinProcess: no visible binding for global variable 'targetFct' thinProcess: no visible binding for global variable 'posMax' Undefined global functions or variables: PoissonF X11 dev.off dssden findGlobals gfit gssanova gssanova0 lN.1 png posMax si spikeTimes ssden st targetFct yi Consider adding importFrom("grDevices", "X11", "dev.off", "png") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... [20s] OK ** running examples for arch 'x64' ... [22s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs