* using log directory 'd:/Rcompile/CRANpkg/local/4.0/PhageCocktail.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'PhageCocktail/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PhageCocktail' version '1.0.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PhageCocktail' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [15s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [9s] ERROR
Running examples in 'PhageCocktail-Ex.R' failed
The error most likely occurred in:

> ### Name: PhageCocktail
> ### Title: Design of the Best Phage Cocktail
> ### Aliases: PhageCocktail
> 
> ### ** Examples
> 
> library(readxl)
> x<-system.file("extdata","Sajben-Nagy.xlsx",package="PhageCocktail",mustWork=TRUE)
> 
> 
> PhageCocktail(x,"ExhaustiveSearch")
New names:
* `` -> `...1`
* `` -> `...2`
* `` -> `...3`
* `` -> `...4`
* `` -> `...5`
* `` -> `...6`
* `` -> `...7`
* `` -> `...8`
* `` -> `...9`
* `` -> `...10`
* `` -> `...11`
* `` -> `...12`
* `` -> `...13`
* `` -> `...14`
* `` -> `...15`
* `` -> `...16`
* `` -> `...17`
$file
[1] "D:/temp/RtmpYTfS6J/RLIBS_1ba0c38c13257/PhageCocktail/extdata/Sajben-Nagy.xlsx"

$method
[1] "ExhaustiveSearch"

$maxCocktailSize
[1] "2"

$allBacteriaLysed
[1] "TRUE"

$Result
$Result$Size2
[1] "Sajben-NagyP3"  "Sajben-NagyP10" "18"            

$Result$Size1
[1] "Sajben-NagyP3" "16"           


$BacteriaLysed
$BacteriaLysed$Size2
 [1] "Sajben-NagyB1"  "Sajben-NagyB2"  "Sajben-NagyB3"  "Sajben-NagyB4" 
 [5] "Sajben-NagyB5"  "Sajben-NagyB6"  "Sajben-NagyB10" "Sajben-NagyB11"
 [9] "Sajben-NagyB13" "Sajben-NagyB15" "Sajben-NagyB16" "Sajben-NagyB18"
[13] "Sajben-NagyB19" "Sajben-NagyB23" "Sajben-NagyB24" "Sajben-NagyB30"
[17] "Sajben-NagyB31" "Sajben-NagyB32"

$BacteriaLysed$Size1
 [1] "Sajben-NagyB2"  "Sajben-NagyB3"  "Sajben-NagyB4"  "Sajben-NagyB5" 
 [5] "Sajben-NagyB6"  "Sajben-NagyB10" "Sajben-NagyB11" "Sajben-NagyB13"
 [9] "Sajben-NagyB15" "Sajben-NagyB16" "Sajben-NagyB19" "Sajben-NagyB23"
[13] "Sajben-NagyB24" "Sajben-NagyB30" "Sajben-NagyB31" "Sajben-NagyB32"


$non_usefulPhages
[1] "All the phages are useful (all of them lyse some bacterium)"

$non_lysedBacteria
 [1] "Sajben-NagyB34" "Sajben-NagyB33" "Sajben-NagyB29" "Sajben-NagyB28"
 [5] "Sajben-NagyB27" "Sajben-NagyB26" "Sajben-NagyB25" "Sajben-NagyB22"
 [9] "Sajben-NagyB21" "Sajben-NagyB20" "Sajben-NagyB17" "Sajben-NagyB14"
[13] "Sajben-NagyB12" "Sajben-NagyB9"  "Sajben-NagyB8"  "Sajben-NagyB7" 

> 
> PhageCocktail(x,"ExhaustivePhi")
New names:
* `` -> `...1`
* `` -> `...2`
* `` -> `...3`
* `` -> `...4`
* `` -> `...5`
* `` -> `...6`
* `` -> `...7`
* `` -> `...8`
* `` -> `...9`
* `` -> `...10`
* `` -> `...11`
* `` -> `...12`
* `` -> `...13`
* `` -> `...14`
* `` -> `...15`
* `` -> `...16`
* `` -> `...17`
Error in if (MaxPhage < Phi) { : argument is of length zero
Calls: PhageCocktail -> ExhaustivePhi
Execution halted
* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR