* using log directory 'd:/Rcompile/CRANpkg/local/4.0/IDConverter.Rcheck' * using R version 4.0.5 (2021-03-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'IDConverter/DESCRIPTION' ... OK * this is package 'IDConverter' version '0.3.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'IDConverter' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [5s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [3s] ERROR Running 'testthat.R' [3s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(IDConverter) > > test_check("IDConverter") trying URL 'https://zenodo.org/record/6342397/files/icgc.rda' trying URL 'https://zenodo.org/record/6342397/files/pcawg_full.rda' trying URL 'https://zenodo.org/record/6342397/files/tcga.rda' [ FAIL 3 | WARN 6 | SKIP 0 | PASS 2 ] == Failed tests ================================================================ -- Error (test-roxytest-testexamples-convert_icgc.R:8:3): Function convert_icgc() @ L25 -- Error in `convert(dt, x, from, to, multiple)`: Bad identifier types, valid input are: Backtrace: x 1. \-IDConverter::convert_icgc("SP29019") at test-roxytest-testexamples-convert_icgc.R:8:2 2. \-IDConverter:::convert(dt, x, from, to, multiple) -- Error (test-roxytest-testexamples-convert_pcawg.R:8:3): Function convert_pcawg() @ L38 -- Error in `convert(dt, x, from, to, multiple)`: Bad identifier types, valid input are: Backtrace: x 1. \-IDConverter::convert_pcawg("SP1677") at test-roxytest-testexamples-convert_pcawg.R:8:2 2. \-IDConverter:::convert(dt, x, from, to, multiple) -- Error (test-roxytest-testexamples-convert_tcga.R:8:3): Function convert_tcga() @ L24 -- Error in `convert(dt, x, from, to, multiple)`: Bad identifier types, valid input are: Backtrace: x 1. \-IDConverter::convert_tcga("TCGA-02-0001-10") at test-roxytest-testexamples-convert_tcga.R:8:2 2. \-IDConverter:::convert(dt, x, from, to, multiple) [ FAIL 3 | WARN 6 | SKIP 0 | PASS 2 ] Error: Test failures Execution halted * checking PDF version of manual ... OK * DONE Status: 1 ERROR