Estimate Brain Networks and Connectivity with Population-Derived Priors

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Documentation for package ‘BayesBrainMap’ version 0.1.3

• DESCRIPTION file.
• Package NEWS.

Help Pages

bdiag_m2	Bdiag m2
BrainMap	Bayesian brain mapping
Chol_samp_fun	Cholesky-based FC sampling
EM_BrainMap	EM Algorithms for Bayesian brain maps
EM_BrainMap.independent	EM Algorithms for Bayesian brain maps
EM_BrainMap.spatial	EM Algorithms for Bayesian brain maps
engagements	Engagements of (spatial) Bayesian brain mapping
estimate.ESS	Estimation of effective sample size
estimate_nu	Universally estimate IW dof parameter nu based on method of moments, so that no empirical variance is under-estimated
estimate_nu_matrix	Estimate IW dof parameter nu based on method of moments
estimate_prior	Estimate prior
estimate_prior.cifti	Estimate prior
estimate_prior.gifti	Estimate prior
estimate_prior.nifti	Estimate prior
export_prior	Export prior
IW_var	Compute theoretical Inverse-Wishart variance of covariance matrix elements
IW_var_cor	Compute theoretical Inverse-Wishart variance of correlation matrix elements
lik	Compute likelihood in SPDE model for ESS estimation
plot.bMap.cifti	Plot BrainMap estiamte
plot.bMap.matrix	Plot prior
plot.bMap.nifti	Plot prior
plot.bMap_eng.cifti	Plot engagements
plot.prior.cifti	Plot prior
plot.prior.gifti	Plot prior
plot.prior.matrix	Plot prior
plot.prior.nifti	Plot prior
print.bMap.cifti	Summarize a '"bMap.cifti"' object
print.bMap.matrix	Summarize a '"bMap.matrix"' object
print.bMap.nifti	Summarize a '"bMap.nifti"' object
print.bMap_eng.cifti	Summarize a '"bMap_eng.cifti"' object
print.bMap_eng.matrix	Summarize a '"bMap_eng.matrix"' object
print.bMap_eng.nifti	Summarize a '"bMap_eng.nifti"' object
print.prior.cifti	Summarize a '"prior.cifti"' object
print.prior.gifti	Summarize a '"prior.gifti"' object
print.prior.matrix	Summarize a '"prior.matrix"' object
print.prior.nifti	Summarize a '"prior.nifti"' object
print.summary.bMap.cifti	Summarize a '"bMap.cifti"' object
print.summary.bMap.matrix	Summarize a '"bMap.matrix"' object
print.summary.bMap.nifti	Summarize a '"bMap.nifti"' object
print.summary.bMap_eng.cifti	Summarize a '"bMap_eng.cifti"' object
print.summary.bMap_eng.matrix	Summarize a '"bMap_eng.matrix"' object
print.summary.bMap_eng.nifti	Summarize a '"bMap_eng.nifti"' object
print.summary.prior.cifti	Summarize a '"prior.cifti"' object
print.summary.prior.gifti	Summarize a '"prior.gifti"' object
print.summary.prior.matrix	Summarize a '"prior.matrix"' object
print.summary.prior.nifti	Summarize a '"prior.nifti"' object
pw_estimate	Estimate residual autocorrelation for prewhitening
summary.bMap.cifti	Summarize a '"bMap.cifti"' object
summary.bMap.matrix	Summarize a '"bMap.matrix"' object
summary.bMap.nifti	Summarize a '"bMap.nifti"' object
summary.bMap_eng.cifti	Summarize a '"bMap_eng.cifti"' object
summary.bMap_eng.matrix	Summarize a '"bMap_eng.matrix"' object
summary.bMap_eng.nifti	Summarize a '"bMap_eng.nifti"' object
summary.prior.cifti	Summarize a '"prior.cifti"' object
summary.prior.gifti	Summarize a '"prior.gifti"' object
summary.prior.matrix	Summarize a '"prior.matrix"' object
summary.prior.nifti	Summarize a '"prior.nifti"' object
UpdateTheta_BrainMap	Parameter Estimates in EM Algorithm for Bayesian brain map
UpdateTheta_BrainMap.independent	Parameter Estimates in EM Algorithm for Bayesian brain map
UpdateTheta_BrainMap.spatial	Parameter Estimates in EM Algorithm for Bayesian brain map
var_sq_err	Compute the error between empirical and theoretical variance of covariance matrix elements
var_sq_err_constrained	Compute the overall error between empirical and theoretical variance of CORRELATION matrix elements