exampleBAM | An example BAM file. |
exampleMutation | An example mutation file. |
exampleMutCall | An example mutated read ID file. |
fun_analysis | Analyzing function. |
fun_convert | Mutation data file converter |
fun_hairpin_check | Hairpin-structure sequence check function |
fun_hairpin_trimming | Adapter sequence trimming function |
fun_homology | Homology check function. |
fun_insert_length | Insert length checker for BAM file |
fun_load_bam | BAM file loader |
fun_load_chr_no | Chromosome number loading function. |
fun_load_genome | Genome loading function. |
fun_load_id | Mutation-supporting read ID files loader |
fun_load_mutation | Mutation data file loader |
fun_load_mutation_gz | Mutation data file loader |
fun_read_check | Read check function. |
fun_repeat_check | Repeat check function. |
fun_save | Save function. |
fun_save_gz | Save function. |
fun_setting | Mutated position search function. |
fun_summary | Summarizing function. |
fun_support | Supporting length calculation function. |
fun_zero | Devide function without 0/0 errors |
homology_searched | An example sequence infromation file. |
msec_analyzed | An example mutation file. |
msec_homology_searched | An example mutation file. |
msec_read_checked | An example mutation file. |
msec_summarized | An example mutation file. |
mut_depth_checked | An example sequence infromation file. |